Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00173 ATGCGAATTTGCAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTATGGACGCAATTCCCAAGCGCCAATTGTTAATCGTAGACAATATTGTCGATCTCTTCTTCGCCATTGACATCTTCTTCACCTTCTTCGTTGCTTACATTGATCCTCACACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTGGGATTGCTCAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTCGTATTTGTCACTTTATTTTATGTTCATTGTGCTGGATGCCTCTACTACTTGTTGGCTGATCGACATCCACGTGAAGAGAAGACCTGGATCGGAACCTTATTTCCAAATTTCAAAGAGATTAGCCTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACTGTGGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATCGAAATGGCCTCAAATTTTGTTAACCGAAATCGCCTGCCTTCGAGGTTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAACAGCTGATTGAACAGCTTCCGAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCGAAGGAAACACTTGTGGTGCTGGTAGCAAAGATGAAAGCCGAGTATATACCGCCTAAGGAGGACGTGATAGTACAAAACGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGCGAGATGGATGTGGAACGGATTGTTGGGACATTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACCCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTACTACAAGAAGCTATGCATATCAAACAAGAAGACAGTATGGTCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCGGAAAAAGAGGTGCCGACGTTGATTGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATGGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGAGCCTGGAAAGCTGATCAGATTGCCACATTCAATGGAGGAGCTCAAAAAACTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTTTCATAG 1668 42.33 MRICRWWQSFMVVLVAYSVWVYPLEVAFMDAIPKRQLLIVDNIVDLFFAIDIFFTFFVAYIDPHTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLVFVTLFYVHCAGCLYYLLADRHPREEKTWIGTLFPNFKEISLGVRYTSAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIVQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLHCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMHIKQEDSMVIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSMELDFARVNIYKGHPVARKQASCDEPGKLIRLPHSMEELKKLAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2444454 2448174 - Lsi05G001730.1 Lsi05g00173 662665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00173 555 ProSiteProfiles cAMP/cGMP binding motif profile. 324 443 IPR000595 -
Lsi05g00173 555 Pfam KHA, dimerisation domain of potassium ion channel 483 554 IPR021789 -
Lsi05g00173 555 PANTHER POTASSIUM CHANNEL AKT2/3 4 451 - -
Lsi05g00173 555 PANTHER POTASSIUM CHANNEL AKT1 477 554 IPR045319 GO:0005249|GO:0006813
Lsi05g00173 555 Pfam Cyclic nucleotide-binding domain 345 426 IPR000595 -
Lsi05g00173 555 Pfam Ion transport protein 5 253 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi05g00173 555 Gene3D - 6 247 - -
Lsi05g00173 555 Gene3D Jelly Rolls 291 460 IPR014710 -
Lsi05g00173 555 ProSiteProfiles KHA domain profile. 483 555 IPR021789 -
Lsi05g00173 555 SUPERFAMILY cAMP-binding domain-like 251 441 IPR018490 -
Lsi05g00173 555 PANTHER POTASSIUM CHANNEL AKT2/3 477 554 - -
Lsi05g00173 555 PRINTS EAG/ELK/ERG potassium channel family signature 194 211 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi05g00173 555 PRINTS EAG/ELK/ERG potassium channel family signature 238 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi05g00173 555 PRINTS EAG/ELK/ERG potassium channel family signature 41 51 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi05g00173 555 PRINTS EAG/ELK/ERG potassium channel family signature 220 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi05g00173 555 SMART cnmp_10 324 441 IPR000595 -
Lsi05g00173 555 CDD CAP_ED 324 427 IPR000595 -
Lsi05g00173 555 PANTHER POTASSIUM CHANNEL AKT1 4 451 IPR045319 GO:0005249|GO:0006813
Lsi05g00173 555 SUPERFAMILY Voltage-gated potassium channels 3 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00173 Lsi-Chr5:2444454 Lsi06g00933 Lsi-Chr6:19182245 2.35E-154 dispersed
Lsi05g00173 Lsi-Chr5:2444454 Lsi03g01408 Lsi-Chr3:25030619 2.92E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00173 K21867 - csv:101205212 1053.89