Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00175 ATGCAGAAAGAGGAAATGATGAAGATTTTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAACCCCATTTGCCCAATGGACCTCAATTATGTCCTCAGAATCCCTTGGAATGCCACTGCTTGCCAGAACCCTTTCTTCCACACCACTGCCAAATCCGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTCAAAGAGACTTCTCTTTTCAACCTCCCTGACCTCGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTTGCTCTCCCTTCCCGGCGACCTTGTTTCCAGTTGCTTTCATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCAGGTATTCAAACTACTCGAGATTGGGTTGCGAAACTTGGCCCGAACTCGCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCAACGCTGGTTTGAAAGTTCAAGCTATTTTGACTCGACTTGATGGTAATAAATCTCATTCTATGGATTGCTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAAGGCAACAGTGCGTTAGATTGCATATTGAATTTGCCATTGAATACTCAGGATTCCAAAAATAATCATTCTGCTCTAATTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTCCTTTTTTTTCTGTTAGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTGAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCCAGGCCAAACACCGGATCAATTTGGTTTAAGATTCAGGAGCTTGAGAAAGCAACTGATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGAACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCAGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTGAAGCATAGGAATCTTGTTCCACTTCGAGGTTGTTGCGTGATCGATGGGGATGGCGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCGAATGGAAATCTTGATGACTATTTGTTCCCTATACCATTTGATCAAGTTGGAACTGTAAAAAAACCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGATGTGGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAACCTGCCATATATCACAGAGATATCAAGGCGACGAACATATTGCTAGATGCCGACATGAGAGCAAGAGTGGCAGATTTCGGGCTTGCCAAACAGAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGAACTCATGGGTATTTAGCCCCGGAATATGCACTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTCGATTTCTCTTTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGAGAAACTCTAGATCCTTCTCTACTGAAAGATGGAGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAGAGGTTCATTGGGGTTGGAATTTTATGTTCTCATGTGATGGTGGCTTTGAGGCCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGGCATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGCGGACATGAATTGCATAACGGTGACATGCTCAGATGA 1962 43.02 MQKEEMMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATACQNPFFHTTAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSLLSLPGDLVSSCFHPLQFVISANVCAGIQTTRDWVAKLGPNSPLDSGCRSELVGPGCDACLNAGLKVQAILTRLDGNKSHSMDCFYFAVLYAAGIVNESGPEGNSALDCILNLPLNTQDSKNNHSALIYGLTAAAVGILVLFFLLGIGFWFYKWKKLAEKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATDNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDGGHDEGASERYLVYDYMPNGNLDDYLFPIPFDQVGTVKKPLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFIGVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGHELHNGDMLR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2506651 2508612 - Lsi05G001750.1 Lsi05g00175 662667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00175 653 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 16 651 - -
Lsi05g00175 653 Pfam Protein kinase domain 316 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00175 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Lsi05g00175 653 SMART serkin_6 314 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00175 653 CDD STKc_IRAK 320 609 - -
Lsi05g00175 653 Gene3D Transferase(Phosphotransferase) domain 1 399 617 - -
Lsi05g00175 653 ProSitePatterns Protein kinases ATP-binding region signature. 320 343 IPR017441 GO:0005524
Lsi05g00175 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 651 - -
Lsi05g00175 653 Pfam SPARK 32 200 IPR043891 -
Lsi05g00175 653 ProSiteProfiles Protein kinase domain profile. 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00175 653 Gene3D Phosphorylase Kinase; domain 1 279 398 - -
Lsi05g00175 653 SUPERFAMILY Protein kinase-like (PK-like) 292 608 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02327 Lsi-Chr2:29889142 Lsi05g00175 Lsi-Chr5:2506651 4.16E-119 dispersed
Lsi05g00175 Lsi-Chr5:2506651 Lsi02g00840 Lsi-Chr2:7864102 9.61E-76 dispersed
Lsi05g00175 Lsi-Chr5:2506651 Lsi03g01367 Lsi-Chr3:24601731 6.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83626 PF00069 Pkinase 1.70E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00175 - - bhj:120088261 1229.54