Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00201 ATGTCATTCCGAAGCATTGTTCGTGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAACGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCCTGTGCTGCAGTATGCCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGGAAGCTTACCTTTCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAGCGTACGCGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCGAGTAGCTCTTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACGAAATTCATTGTCTATGATACCCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCTGGTGGCACTGTTCCAGGCCAACCTGAGCTCCTCCCTCCCAACTCTCTCGACGACTCGTTCCGAAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGGGCAGCATTGGATGGCGATGAGGAGGGAAAGATGAGACCTTTGGTTCTTAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATTGCAGCAATACAGCCAGCCGCTGGCGCTCCAACCCCATCTCAACCAGGCCCACCTGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACAATGGATTATCGATATCCGCTCTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.47 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2777209 2780686 + Lsi05G002010.1 Lsi05g00201 662693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00201 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Lsi05g00201 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lsi05g00201 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lsi05g00201 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Lsi05g00201 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lsi05g00201 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Lsi05g00201 428 PANTHER TUBBY-RELATED 1 428 - -
Lsi05g00201 428 Pfam Tub family 115 423 IPR000007 -
Lsi05g00201 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lsi05g00201 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Lsi05g00201 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Lsi05g00201 428 Gene3D - 49 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00669 Lsi-Chr1:5398418 Lsi05g00201 Lsi-Chr5:2777209 2.78E-116 dispersed
Lsi04g01686 Lsi-Chr4:24240314 Lsi05g00201 Lsi-Chr5:2777209 3.42E-152 dispersed
Lsi05g00201 Lsi-Chr5:2777209 Lsi08g00296 Lsi-Chr8:7776228 0 dispersed
Lsi05g00201 Lsi-Chr5:2777209 Lsi07g00258 Lsi-Chr7:2829163 2.17E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25284 PF01167 Tub 8.00E-117 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00201 K19600 - csv:101216314 867.84