Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00214 ATGAGCATTACCGCGAATCAAAGAGGGTCCAGATCATGGGCCACCGCCGAGGAGTTGCCGGTGTCCAGTGGGGCTCCGATACCATCCAAGAAAAAATGGACAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCATAGCAGAGATTATCTTTCTGGGTCGCCTTGATGTGGCTAAAAATGTAGCCATGGTCGATTCATGGGCTGATTTGTTCTACCGCTCACCGCCTTCCCGTGCACTGATTGGCGGAGCTGATGATTTGAATTCTCGGTTTATTGACGGCGATCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACGTATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGTTCTGATGAGGGGTGGAAATCTTGTGCCGTAGGATGTGAATTTCAGGCCAGTCCAAGTAAAGATCCGGATGCTGCTTTTGGTTTAAATCACGAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCCCTATATTATGCAGATAACAATATTGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGACTGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGCCTGGAAGCTCTTGAGGCTTTTGAAAAGCTGAACATCACAATAGATTCCTATGTGGACAAATTGGAGACTCTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCTGTTCCAGTGGTTATTGGAGCTCCAAATATTGAAGAGTTTGCTCCTGCACCTTCTTCATTTTTGCATATCAGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGAGGCATTCAACAACTCTCTGAGGTGGAAATACGAGGGTCCATCTGATTCTTTCAAGGCACTATTGGATATGGCAGCAGTTCATTCATCATGTCGCCTTTGTATTCACTTGGCAACTGGTATTCATGAGACCGAAGAAAAGGGTCTAGCATTCAGAAATCGACCTTGTAAATGCACTAGAGGTTCGGAGACCATTTATCACGTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTCCAGTAATCTGACGGTTGAAGGGCTGACATCAGCAGTGATCTTGAAGTTCAATTCTCTGAAGCATGAACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGCGATGAATTAAGGTTGTACAAAATATACCCAGTTGGGTTGACGCAAAGGCAAGCTTTATATACCTTCAGATTTAAAGGGGACTCTGATCTCAGAAGATATGTGGAAGATAACCCTTGTGCCAAATTTGAAGCCATTTTTGTATAG 1512 44.64 MSITANQRGSRSWATAEELPVSSGAPIPSKKKWTNAMPLFIALVVIAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSRALIGGADDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSDEGWKSCAVGCEFQASPSKDPDAAFGLNHEGGMPSIIRSMESSLYYADNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKSETALAAAFISNCGARNFRLEALEAFEKLNITIDSYVDKLETLKRYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIEEFAPAPSSFLHIRELSDVESVANSMKYLAANPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHLATGIHETEEKGLAFRNRPCKCTRGSETIYHVYVRERGRFNSESIFLRSSNLTVEGLTSAVILKFNSLKHEPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKGDSDLRRYVEDNPCAKFEAIFV 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2924983 2930691 + Lsi05G002140.1 Lsi05g00214 662706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00214 503 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 220 374 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi05g00214 503 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 32 480 - -
Lsi05g00214 503 Gene3D - 167 351 IPR038577 -
Lsi05g00214 503 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 32 480 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi05g00214 503 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 112 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00214 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101202837 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00214 Lsi-Chr5:2924983 Lsi08g00608 Lsi-Chr8:14384684 2.33E-12 dispersed
Lsi03g00496 Lsi-Chr3:5700301 Lsi05g00214 Lsi-Chr5:2924983 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.4 1.4e-198 689.5
Lsi02g00086 . 115 581 Xyloglucan Fucosyltransferase1 AT2G03220 65.7 3.3e-187 651.7
Lsi07g00815 . 55 510 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 8.0e-141 497.7
Lsi04g00398 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.0 9.5e-182 633.6
Lsi02g00086 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.7 7.8e-168 587.4
Lsi07g00815 . 55 511 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 3.8e-130 462.2
Lsi04g00398 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 7.4e-152 534.3
Lsi02g00086 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-141 500.4
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.9 1.1e-147 520.4
Lsi02g00086 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 7.1e-139 491.1
Lsi04g00398 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 9.0e-158 553.9
Lsi02g00086 . 113 582 Xyloglucan Fucosyltransferase1 AT1G14080 54.5 6.3e-151 531.2
Lsi07g00815 . 56 502 Xyloglucan Fucosyltransferase1 AT1G14080 50.6 5.2e-129 458.4
Lsi04g00398 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.7 1.4e-163 573.2
Lsi02g00086 . 115 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-161 565.5
Lsi07g00815 . 56 505 Xyloglucan Fucosyltransferase1 AT1G14100 50.9 1.8e-134 476.5
Lsi04g00398 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 1.0e-136 483.8
Lsi02g00086 . 112 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 1.7e-131 466.5
Lsi04g00398 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 2.2e-153 539.3
Lsi02g00086 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 2.4e-144 509.2
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT3G19280 61.0 5.6e-178 620.9
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT3G19280 55.5 3.4e-143 505.4
Lsi05g00214 . 1 503 Xyloglucan Fucosyltransferase1 AT1G49710 62.0 7.3e-181 630.6
Lsi03g00496 . 1 472 Xyloglucan Fucosyltransferase1 AT1G49710 56.8 1.5e-146 516.5
Lsi08g00608 . 985 1388 Xyloglucan Fucosyltransferase1 AT1G71990 64.0 2.5e-152 535.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00214 Lsi_Chr05 FPKM 4.617745 5.072076 7.621002 8.013861 0.785523 0.598481 0.622042 0.0 0.0 0.0