Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00214 ATGAGCATTACCGCGAATCAAAGAGGGTCCAGATCATGGGCCACCGCCGAGGAGTTGCCGGTGTCCAGTGGGGCTCCGATACCATCCAAGAAAAAATGGACAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCATAGCAGAGATTATCTTTCTGGGTCGCCTTGATGTGGCTAAAAATGTAGCCATGGTCGATTCATGGGCTGATTTGTTCTACCGCTCACCGCCTTCCCGTGCACTGATTGGCGGAGCTGATGATTTGAATTCTCGGTTTATTGACGGCGATCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACGTATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGTTCTGATGAGGGGTGGAAATCTTGTGCCGTAGGATGTGAATTTCAGGCCAGTCCAAGTAAAGATCCGGATGCTGCTTTTGGTTTAAATCACGAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCCCTATATTATGCAGATAACAATATTGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGACTGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGCCTGGAAGCTCTTGAGGCTTTTGAAAAGCTGAACATCACAATAGATTCCTATGTGGACAAATTGGAGACTCTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCTGTTCCAGTGGTTATTGGAGCTCCAAATATTGAAGAGTTTGCTCCTGCACCTTCTTCATTTTTGCATATCAGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGAGGCATTCAACAACTCTCTGAGGTGGAAATACGAGGGTCCATCTGATTCTTTCAAGGCACTATTGGATATGGCAGCAGTTCATTCATCATGTCGCCTTTGTATTCACTTGGCAACTGGTATTCATGAGACCGAAGAAAAGGGTCTAGCATTCAGAAATCGACCTTGTAAATGCACTAGAGGTTCGGAGACCATTTATCACGTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTCCAGTAATCTGACGGTTGAAGGGCTGACATCAGCAGTGATCTTGAAGTTCAATTCTCTGAAGCATGAACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGCGATGAATTAAGGTTGTACAAAATATACCCAGTTGGGTTGACGCAAAGGCAAGCTTTATATACCTTCAGATTTAAAGGGGACTCTGATCTCAGAAGATATGTGGAAGATAACCCTTGTGCCAAATTTGAAGCCATTTTTGTATAG 1512 44.64 MSITANQRGSRSWATAEELPVSSGAPIPSKKKWTNAMPLFIALVVIAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSRALIGGADDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSDEGWKSCAVGCEFQASPSKDPDAAFGLNHEGGMPSIIRSMESSLYYADNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKSETALAAAFISNCGARNFRLEALEAFEKLNITIDSYVDKLETLKRYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIEEFAPAPSSFLHIRELSDVESVANSMKYLAANPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHLATGIHETEEKGLAFRNRPCKCTRGSETIYHVYVRERGRFNSESIFLRSSNLTVEGLTSAVILKFNSLKHEPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKGDSDLRRYVEDNPCAKFEAIFV 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2924983 2930691 + Lsi05G002140.1 Lsi05g00214 662706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00214 503 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 220 374 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi05g00214 503 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 32 480 - -
Lsi05g00214 503 Gene3D - 167 351 IPR038577 -
Lsi05g00214 503 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 32 480 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi05g00214 503 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 112 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00214 Lsi-Chr5:2924983 Lsi08g00608 Lsi-Chr8:14384684 2.33E-12 dispersed
Lsi03g00496 Lsi-Chr3:5700301 Lsi05g00214 Lsi-Chr5:2924983 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00214 K00753 - csv:101202837 909.827