Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00215 ATGGCCGCCACCGCACTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTGTTCCTTCAACTGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACAGGTGAATTGGGAGTTTCTTCAAACTTATCTAACATTTGCCTGCAATCTATTTTCCAAACCATGGGACTGTATGGAGTTCCTAAAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCGTGTAGAGGCCGAGAAACCGTCACACAGATGCTGGAATCTCCAAAATTTACAAATGTAAGTGAAACTTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACATTAAATACTTGTCGCGACGCTACGTTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTATTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAATAAGCCTCCAGGTTCCATAGCTATCATTTGCATAATGCTATTATACTTCTCTAATGGAAGAGAATATTGGGTGAGCGGATGGTGTCACACAGAAGAGGGCACTATTTATCTGCTCATTATTTTTTTTGGTCAGATACAAGTTTCCTTAATCTTGTGTGCTCCACCCCCATCTTTGGCTACACCAGATATTTCCCCAAGTCCATCAGCTGCTGAAAGTCCGGGACCACTGACACTAGGTGTTTCTGGTGATAAAAGTCATCAACATCATTCCTACCATCTAACATTAGTGGCAGGTATTGGAATTGCGGTGACTGTCGGTTCCGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTCAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGTTGGGTGAATTATCTAGTTTTACGAGTTCTTTGCTATAAGGAGATCAAGAAGGCAACAAATAGTTTTAGTACAACAATTGGTCAAGGAGGATACGGAACTGTTTATAAAGCTCAATTCAGTGATGACTCAGTGGTAGCTGTTAAGAGGATGAACAAAGTCTCCGAGCAGGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTGTACGAGCATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCAGACGAGAATCCAAATTGCCATCGATGTCGCCAATGCTCTGGAGTATCTTCACTATTACTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTGGAAATAGTTACTGGTAGACGTGCGATACAAGATGGGAAGAATTTGGTTGAATGGTCCCTTGGGTACATGATTTCAGATTCAAGGATATCTGAACTAGTAGATCCAAGTATCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTCGTGTCAATTGTGAGATGGTGCACCGAGGTAGAAGGCAGGGCGAGGCCTTCGATCAAACAGGTGCTTCGACTATTGTATGAGAGTTCGGACCCGATGCATCAAGGGCTTGTAGAGGCTGTGGATGATGAAGAATATGGAGGCATTGAAGGGAGACAGAGTATGAGCAAGAGGAAAATGCATAAAAGTGATGTGATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTTGTCTGTCCCAGACCAATTGTTTTAG 2199 42.97 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANATGELGVSSNLSNICLQSIFQTMGLYGVPKNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSETCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVIDLATCFFGVQGLNKPPGSIAIICIMLLYFSNGREYWVSGWCHTEEGTIYLLIIFFGQIQVSLILCAPPPSLATPDISPSPSAAESPGPLTLGVSGDKSHQHHSYHLTLVAGIGIAVTVGSVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGWVNYLVLRVLCYKEIKKATNSFSTTIGQGGYGTVYKAQFSDDSVVAVKRMNKVSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEHMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSIKSSFNLDQLHTVVSIVRWCTEVEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVPDQLF 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2930967 2936048 - Lsi05G002150.1 Lsi05g00215 662707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00215 732 PANTHER OS01G0750732 PROTEIN 245 727 - -
Lsi05g00215 732 PANTHER BNAC06G02630D PROTEIN 245 727 - -
Lsi05g00215 732 Gene3D Phosphorylase Kinase; domain 1 350 454 - -
Lsi05g00215 732 Pfam SPARK 28 160 IPR043891 -
Lsi05g00215 732 Gene3D Transferase(Phosphotransferase) domain 1 455 666 - -
Lsi05g00215 732 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Lsi05g00215 732 PANTHER OS01G0750732 PROTEIN 8 214 - -
Lsi05g00215 732 ProSiteProfiles Protein kinase domain profile. 379 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00215 732 SUPERFAMILY Protein kinase-like (PK-like) 355 648 IPR011009 -
Lsi05g00215 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Lsi05g00215 732 SMART serkin_6 379 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00215 732 PANTHER BNAC06G02630D PROTEIN 8 214 - -
Lsi05g00215 732 Pfam Protein kinase domain 383 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00215 732 CDD STKc_IRAK 385 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00215 Lsi-Chr5:2930967 Lsi02g01199 Lsi-Chr2:15311779 1.81E-76 dispersed
Lsi05g00663 Lsi-Chr5:8672591 Lsi05g00215 Lsi-Chr5:2930967 4.80E-64 dispersed
Lsi10g01132 Lsi-Chr10:15583277 Lsi05g00215 Lsi-Chr5:2930967 5.48E-60 dispersed
Lsi05g00215 Lsi-Chr5:2930967 Lsi11g00260 Lsi-Chr11:2621815 1.15E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83627 PF00069 Pkinase 1.20E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00215 - - csv:101219079 1185.24