Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00219 ATGCCTGGGACTGGAAGTGTTGCTGTTGAACCTTTGGATTTGAGCGTACACATTCCATACCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACCTGTCCGGTCACTAGGGCTCCACTCACCGACTTCACGCTCATCCCGAACCATACACTGCGACGGTTAATCCAGGACTGGTGCGTTGCGAATCGGTCTTACGGCGTTGAGAGGATTCCGACACCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTGGCCAAGCTTCGTCGAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGGTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTGTTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTATTTGAAGGCGTTGTCGAAATTCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTTTGTTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGACCGATTTCCCGATTTGGAGAAGTACGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATTCCAACTGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCGGACAGAGCGACGGAATCAGCTGTCGGAGCTCTGGTATCGCTGTGTTCGGCATCGGAGGAGAATCGTCGAGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCCCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTACAGTGAAATTGTGGTACCGTTTTGCTAA 1278 50.55 MPGTGSVAVEPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLGQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYAYSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2970010 2971287 + Lsi05G002190.1 Lsi05g00219 662711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00219 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Lsi05g00219 425 PANTHER WDSAM1 PROTEIN 9 421 IPR045185 GO:0061630
Lsi05g00219 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Lsi05g00219 425 CDD RING-Ubox_PUB 22 63 IPR045210 -
Lsi05g00219 425 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Lsi05g00219 425 Gene3D - 93 412 IPR011989 -
Lsi05g00219 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 421 - -
Lsi05g00219 425 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Lsi05g00219 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Lsi05g00219 425 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01467 Lsi-Chr4:22395626 Lsi05g00219 Lsi-Chr5:2970010 1.85E-42 dispersed
Lsi04g02334 Lsi-Chr4:30554669 Lsi05g00219 Lsi-Chr5:2970010 1.02E-20 dispersed
Lsi05g00219 Lsi-Chr5:2970010 Lsi05g00339 Lsi-Chr5:4302023 1.32E-64 dispersed
Lsi05g00219 Lsi-Chr5:2970010 Lsi03g01816 Lsi-Chr3:29647859 1.26E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00219 - - csv:101219319 753.436