Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00223 ATGGCGACCAATGAGCAACAAGACCAGGCAGGAAGGCATCAAGAAGTCGGGCATAAGAGCTTGTTGCAAAGCGATGCTCTTAACCAGTATATTTTAGAGACAAGTGTGTATCCAAGAGAGCCAGAAGCTATGAAGGAACTTAGAGACTTGACAGCCAAACATCCTTGGAATATAATGACAACATCAGCAGATGAAGGGCAGTTCTTGAACATGCTGTTGAAGCTGATCAATGCCAAGAACACCATGGAGATTGGTGTCTATACTGGCTACTCCCTCCTCGCCACCGCCCTCGCTCTTCCTGACGATGGAAAGGACAACTACATTAACTACCATAAGAGGCTAATTGATCTTGTCAAAGTTGGGGGAGTAATCGGCTACGACAACACACTATGGAACGGTTCTGTCGTGGCACCACCTGATGCACCCATGCGTAAGTATGTACGATATTACAGAGACTTTGTACTAGAGCTCAACAAGGCCCTTGCTCTCGACCTTAGAATCGAAATCTGCATGCTTCCAGTTGGTGATGGAATCACTCTTTGTCGTCGGATCAACTGA 558 46.42 MATNEQQDQAGRHQEVGHKSLLQSDALNQYILETSVYPREPEAMKELRDLTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALALDLRIEICMLPVGDGITLCRRIN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2997201 3000478 + Lsi05G002230.1 Lsi05g00223 662715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00223 185 Gene3D Vaccinia Virus protein VP39 103 185 IPR029063 -
Lsi05g00223 185 Gene3D Vaccinia Virus protein VP39 11 102 IPR029063 -
Lsi05g00223 185 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 183 IPR029063 -
Lsi05g00223 185 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 184 IPR002935 GO:0008171
Lsi05g00223 185 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 1 104 185 - -
Lsi05g00223 185 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 1 4 104 - -
Lsi05g00223 185 PANTHER O-METHYLTRANSFERASE-RELATED 104 185 - -
Lsi05g00223 185 PANTHER O-METHYLTRANSFERASE-RELATED 4 104 - -
Lsi05g00223 185 Pfam O-methyltransferase 104 184 IPR002935 GO:0008171
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00676 Lsi-Chr4:6185301 Lsi05g00223 Lsi-Chr5:2997201 2.67E-42 dispersed
Lsi05g00223 Lsi-Chr5:2997201 Lsi07g00844 Lsi-Chr7:9424853 2.37E-17 dispersed
Lsi01g00967 Lsi-Chr1:7885583 Lsi05g00223 Lsi-Chr5:2997201 9.60E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00223 K00588 - oeu:111387945 311.227