Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00226 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTGCATGATACATTTTCTGCATTTGGTAGTATCCTGTCGTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAACCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAACGGAAAGTTAATTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTCAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCGAATGGTATAAGCAGAGGGTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGCAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCCCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTATGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGGCCAATGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCTCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCTGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACGGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCTGAAGCTATGGAGGTTTTGAGGAATGTTGCCGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTTGTGTCGTGA 1962 46.74 MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLIDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3013456 3018941 - Lsi05G002260.1 Lsi05g00226 662718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00226 653 Gene3D - 548 629 - -
Lsi05g00226 653 MobiDBLite consensus disorder prediction 473 494 - -
Lsi05g00226 653 SUPERFAMILY PABC (PABP) domain 495 645 IPR036053 GO:0003723
Lsi05g00226 653 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Lsi05g00226 653 Gene3D - 294 396 IPR012677 -
Lsi05g00226 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Lsi05g00226 653 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Lsi05g00226 653 SMART rrm2_1 30 103 IPR003954 GO:0003676
Lsi05g00226 653 SMART rrm2_1 312 384 IPR003954 GO:0003676
Lsi05g00226 653 SMART rrm2_1 118 190 IPR003954 GO:0003676
Lsi05g00226 653 SMART rrm2_1 209 281 IPR003954 GO:0003676
Lsi05g00226 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Lsi05g00226 653 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Lsi05g00226 653 CDD RRM4_I_PABPs 310 388 - -
Lsi05g00226 653 CDD RRM2_I_PABPs 115 191 IPR045305 -
Lsi05g00226 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Lsi05g00226 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Lsi05g00226 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Lsi05g00226 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Lsi05g00226 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Lsi05g00226 653 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Lsi05g00226 653 CDD RRM1_I_PABPs 30 109 - -
Lsi05g00226 653 Gene3D - 118 190 IPR012677 -
Lsi05g00226 653 Gene3D - 1 117 IPR012677 -
Lsi05g00226 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Lsi05g00226 653 SMART rrm1_1 30 103 IPR000504 GO:0003723
Lsi05g00226 653 SMART rrm1_1 209 281 IPR000504 GO:0003723
Lsi05g00226 653 SMART rrm1_1 312 384 IPR000504 GO:0003723
Lsi05g00226 653 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lsi05g00226 653 PANTHER RNA BINDING PROTEIN 18 634 - -
Lsi05g00226 653 Gene3D - 192 293 IPR012677 -
Lsi05g00226 653 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Lsi05g00226 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Lsi05g00226 653 SMART poly_2 564 627 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00226 Lsi-Chr5:3013456 Lsi08g00587 Lsi-Chr8:14135174 0 dispersed
Lsi03g01958 Lsi-Chr3:30997958 Lsi05g00226 Lsi-Chr5:3013456 2.99E-18 transposed
Lsi07g00319 Lsi-Chr7:3403039 Lsi05g00226 Lsi-Chr5:3013456 1.09E-07 transposed
Lsi09g00082 Lsi-Chr9:702995 Lsi05g00226 Lsi-Chr5:3013456 6.35E-10 transposed
Lsi10g01153 Lsi-Chr10:15840242 Lsi05g00226 Lsi-Chr5:3013456 2.28E-12 transposed
Lsi03g00505 Lsi-Chr3:5831144 Lsi05g00226 Lsi-Chr5:3013456 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00226 K13126 - csv:101219802 1204.5