Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00231 | ATGGCAATGCATCGGTATGAACAAGCTGATGATGAAGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAGGAGGAGAAATGGGAGGAGGAGGAAGATGAAGCTGAGTTAGAACAAACCCATCTGACCCTTTTTTCTTCTTTGGGATTTTTGGAGGAAGATCTCTCTGGGGAAGACGAACGGCTTCTCTCCATGTTGTCTAAGGAAGCAGAGCAGCTGAAACAGAGCAATCTCCATCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGAGTGGATGCTTAAAGTTCAATCTCATTATGGCTTCTCAACTCTCACTGCGATTTTGGCTGTTGCTTATTTTGACAGATTCCTCTTGAGCTTCCATTTTAGGAGTGACAAGCCCTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATACAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTAGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATATTCACTTGGAGTTTTTCAGGCGTTCTGAGTGCCTTCTCCTCTCTCTGCTTTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTGGCAACTGCAACAATGATGAAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAAGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATGGCAATGGCTTTTATCGTCCCATCAACTCCCGCAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCAGGTTTCAGTTCTGACAGCTCCAATGATTCTTGGGCATTTAAAGCAACATCAGTTTGTTCATCACCTGAATCTTCTTTCAAGAAGAGCAAATCTGAAGAACCAAAGATGAAATTTCATTCTCTTAACAGGGCTTTTCTGGACATTGTTGGCAGCCCTTCTTGA | 1131 | 43.5 | MAMHRYEQADDEAQTHLFPLDSLFCEEEKWEEEEDEAELEQTHLTLFSSLGFLEEDLSGEDERLLSMLSKEAEQLKQSNLHLEALLMDPSISAARSSAVEWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFRSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNIHLEFFRRSECLLLSLLSDSRFVGYLPSVLATATMMKVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYGNGFYRPINSRKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFKATSVCSSPESSFKKSKSEEPKMKFHSLNRAFLDIVGSPS | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3074203 | 3076754 | + | Lsi05G002310.1 | Lsi05g00231 | 662723 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00231 | 376 | Coils | Coil | 65 | 85 | - | - | |
| Lsi05g00231 | 376 | SMART | Cyclin_C_2 | 197 | 314 | IPR004367 | - | |
| Lsi05g00231 | 376 | SMART | cyclin_7 | 100 | 188 | IPR013763 | - | |
| Lsi05g00231 | 376 | Pfam | Cyclin, C-terminal domain | 197 | 309 | IPR004367 | - | |
| Lsi05g00231 | 376 | ProSitePatterns | Cyclins signature. | 95 | 126 | IPR006671 | - | |
| Lsi05g00231 | 376 | Coils | Coil | 20 | 40 | - | - | |
| Lsi05g00231 | 376 | Gene3D | - | 67 | 285 | - | - | |
| Lsi05g00231 | 376 | PANTHER | CYCLIN D3.1 PROTEIN | 39 | 353 | - | - | |
| Lsi05g00231 | 376 | PANTHER | CYCLINS | 39 | 353 | IPR039361 | - | |
| Lsi05g00231 | 376 | MobiDBLite | consensus disorder prediction | 305 | 332 | - | - | |
| Lsi05g00231 | 376 | Pfam | Cyclin, N-terminal domain | 68 | 194 | IPR006671 | - | |
| Lsi05g00231 | 376 | CDD | CYCLIN | 95 | 187 | IPR013763 | - | |
| Lsi05g00231 | 376 | Gene3D | - | 77 | 195 | - | - | |
| Lsi05g00231 | 376 | SUPERFAMILY | Cyclin-like | 61 | 195 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01489 | Lsi-Chr4:22564161 | Lsi05g00231 | Lsi-Chr5:3074203 | 1.20E-33 | dispersed | |
| Lsi04g01520 | Lsi-Chr4:22842315 | Lsi05g00231 | Lsi-Chr5:3074203 | 2.93E-85 | dispersed | |
| Lsi05g00231 | Lsi-Chr5:3074203 | Lsi08g01495 | Lsi-Chr8:23110265 | 4.12E-97 | dispersed | |
| Lsi01g00952 | Lsi-Chr1:7729034 | Lsi05g00231 | Lsi-Chr5:3074203 | 1.22E-89 | wgd | |
| Lsi03g00524 | Lsi-Chr3:6105614 | Lsi05g00231 | Lsi-Chr5:3074203 | 3.48E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00231 | K14505 | - | csv:101221213 | 640.573 |