Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00235 ATGATGCACACCAACAAACCATGGCAATTTCTGGCTCTGTTTTCCACCTTCACTTTCTTTTTTCCCTGTTTTGCTCTCAACAGCGATGGTATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAACTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACTGACCTCCGAGGCTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATTGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCCATTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTTTCCAATAATGTTATCTCCGGCGAGTTGCCGGAGGATATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCTGGAAAAGTGCCGGGAAATCTCACTGCTCTGAAGAATCTTACTGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGGTCTTTGCCGGCGGATTTTGGTGGGGAGAAACTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCCATTCCGCTGGATTTCGCCAAGAGGATTCCAGTGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTTAGCCAGAAAACAGAGGCGTTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACTCCCCCAAATGTGTCTGAAACTTCATCTTCTTCTCCAGCAATCGCCGCCATTCCCAAAACAATCGGTTCTGTCCCGGCAACACAGTCCCCCGTAGGTCCAAACGGGACACAAACTTCTGAGTCTCAAAACACCATGAAACCCATCGCAATAGTCGCAATAGCCGTCGGAGACCTCGCCGGAATCGCCATTCTCGCCGTCGTGATTCTCTACGTCTACCATCACAGGAAACGAAAAAACCCCAATTCCCAAACCCCTAAATCCGCCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAACTAACCAGAAAAAACCCTCATCAGTATTGTTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCTACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCCGGAACAACCCACGGCGGAGAGAACAGAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGACGAAACAGAGCTGGAATTGGAGACTCTATTAAAGGCATCGGCATATATACTTGGAGCGAGTGGCGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGCACGGCGTTCGCCGTCAGAAGAATCGGCGACGTCAGTGTGGAGAGATTAAGGGATTTTGAGAGCCAAGTAAGAGCCATTGCTAAGCTTCGACATCAAAATTTGGTGAAAATTCGAGGATTCTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCCAGAGGAATCGCCAGAGGACTGGCCTTCATCCACGACAAGAAGCACATACATGGCAACCTCAAGCCTTCCAACATACTCTTGAACGCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCCAAAATCGCAATCGCTTCCAGTTCTGCCCGGAACTTCGGCAGCCACAGATCCACGCCCAATCGAGAGCATCAAGACGCCAACGGCGGAAGCCCGTCGGTGAGCCTGGGATCGGCGTACCAGGCGCCGGAATCGCTGAAGAATGTGAAAGCAAGCCCTAAATGGGACGTGTACTCGTTCGGGGTGATTCTGCTGGAGATTGTGAGCGGGAAAATTGTGACGGAGAGGGAATTAAGCGGCGGTGAAGAGGAAGGGAGGATTAAGAAGATGGTGGATTTGGCGATTAGAGGGGAAGTTGAAGGGAAAGAAGAGGCAGTAATGGGGATATTTAGATTAGGGTTTAGCTGTGTTTGTTTTGTGCCTCAAAAGAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGATAAAATTTCTTCCATAATTTCTTCTTCCAACAGTTAA 2310 48.74 MMHTNKPWQFLALFSTFTFFFPCFALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRGYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPISIFNASELQILSLSNNVISGELPEDIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPVNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSETSSSSPAIAAIPKTIGSVPATQSPVGPNGTQTSESQNTMKPIAIVAIAVGDLAGIAILAVVILYVYHHRKRKNPNSQTPKSAEKKPPIDSEQDPQTNQKKPSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENRDSKKNGVLVTVDDETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVERLRDFESQVRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNILLNAEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREHQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEIVSGKIVTERELSGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVCFVPQKRPTMKEALQVLDKISSIISSSNS 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3107681 3112592 - Lsi05G002350.1 Lsi05g00235 662727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00235 769 PANTHER OS04G0122200 PROTEIN 21 762 - -
Lsi05g00235 769 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lsi05g00235 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Lsi05g00235 769 MobiDBLite consensus disorder prediction 634 657 - -
Lsi05g00235 769 MobiDBLite consensus disorder prediction 425 450 - -
Lsi05g00235 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00235 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00235 769 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 21 762 - -
Lsi05g00235 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Lsi05g00235 769 Gene3D Phosphorylase Kinase; domain 1 437 543 - -
Lsi05g00235 769 SUPERFAMILY L domain-like 25 288 - -
Lsi05g00235 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Lsi05g00235 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Lsi05g00235 769 Gene3D Ribonuclease Inhibitor 196 292 IPR032675 -
Lsi05g00235 769 MobiDBLite consensus disorder prediction 375 450 - -
Lsi05g00235 769 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00235 Lsi-Chr5:3107681 Lsi10g00183 Lsi-Chr10:3040323 0 dispersed
Lsi05g00235 Lsi-Chr5:3107681 Lsi04g00224 Lsi-Chr4:2329328 1.08E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83628 PF00069 Pkinase 1.20E-30 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00235 - - csv:101203801 1268.45