Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00239 | ATGGGCAGTATTGAAGCAGACAGAACTGTAACAGGACTCGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTTATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATCAAGAATGACCTCGGCATGTCCAATTACCCTATGGTTCCTGGACACGAGGTGGTCGGAGAAGTGGTGGAGCTTGGATCGGAAGTGGATCGATTCAGAATTGGGGAGTTGGTCGGAGTTGGGTGTATTCTTGGATCCTGTTCGAGTTGTAATCCTTGTAATTCTGATAAGGAGCAGTACTGTAACAAGAGAATCTGGACCTATAACGACGTGTATCACGATGGCCGCCCCACCCAAGGCGGCTTCTCCTCCGCCATGGTCGTCCACCAAAAGTTTGTGGTGAGAATCCCAGAAGGAATGTCGCCGGAGCAGGCGGCGCCGATACTGTGCGCGGGAGTGACGGTGTACAGCCCACTGAATCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTAGGGCTGGGCGGCGTTGGGCATATGGGTGTGAAAGTGGCAAAGGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAAAAGAAGAGGGAGGAGGCTCTGGAACATCTCGGTGCGGACGAGTATTTGGTCAGCTCCGACAAGACTCAAATGGAACGAGCCATTGACTCGCTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAACCGTATCTCTCACTGCTAAAACTCGACGGCAAATTAATCTTGATGGGTGTCATTAATACCCCATTGCAATTCGTTTCCCCTCTCCTCATGCTCGGAAGGAAGACAATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTATTGGATTTCTTCAAAGAGAAGGAGCTGAGTTCCATGATTGAAGTGATAAAGCTTGATTACATAAACAAAGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTTGTCGTCGACGTTGCCGGAAGTAAGCTGCCTCAGTGA | 1074 | 49.63 | MGSIEADRTVTGLAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVVELGSEVDRFRIGELVGVGCILGSCSSCNPCNSDKEQYCNKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPEGMSPEQAAPILCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDKTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMTETQEVLDFFKEKELSSMIEVIKLDYINKAFERLEKNDVRYRFVVDVAGSKLPQ | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3151036 | 3153054 | - | Lsi05G002390.1 | Lsi05g00239 | 662731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00239 | 357 | CDD | CAD1 | 11 | 349 | - | - | |
| Lsi05g00239 | 357 | SMART | PKS_ER_names_mod | 20 | 348 | IPR020843 | GO:0016491 | |
| Lsi05g00239 | 357 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 153 | 318 | IPR036291 | - | |
| Lsi05g00239 | 357 | Gene3D | - | 14 | 350 | - | - | |
| Lsi05g00239 | 357 | PANTHER | ALDEHYDE REDUCTASE | 5 | 357 | - | - | |
| Lsi05g00239 | 357 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 68 | 82 | IPR002328 | GO:0008270|GO:0016491 | |
| Lsi05g00239 | 357 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 148 | IPR013154 | - | |
| Lsi05g00239 | 357 | PANTHER | CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED | 5 | 357 | - | - | |
| Lsi05g00239 | 357 | Gene3D | - | 164 | 320 | - | - | |
| Lsi05g00239 | 357 | Pfam | Zinc-binding dehydrogenase | 191 | 314 | IPR013149 | - | |
| Lsi05g00239 | 357 | SUPERFAMILY | GroES-like | 17 | 181 | IPR011032 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00239 | Lsi-Chr5:3151036 | Lsi10g00699 | Lsi-Chr10:9771521 | 4.32E-116 | dispersed | |
| Lsi01g00180 | Lsi-Chr1:1747968 | Lsi05g00239 | Lsi-Chr5:3151036 | 2.14E-19 | transposed | |
| Lsi01g00823 | Lsi-Chr1:6523361 | Lsi05g00239 | Lsi-Chr5:3151036 | 3.82E-119 | transposed | |
| Lsi03g00532 | Lsi-Chr3:6272532 | Lsi05g00239 | Lsi-Chr5:3151036 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00239 | K00083 | - | csv:101222395 | 664.07 |