Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00276 ATGTTCAAACAGAAGGGGCTATCAATTTTTTTGCTTCAATCGCTTCTTATTGCTCTTTGGCTAAAGGGTACATTGTTTGAAGCAATTAGATGCGATTTTGATACTTTATATTTACATGTCACCATCGAATGGTTTGTTGTACGTGCTTTGTTTGCTTGGACGCTGGTTTCTTTGCTTCCCCTTAAGTTCTTATTGCATATACATAATTCGTTTTTAACCAATGGAGATACTGTTCCATCCCCACGAAAGCTTATTCTATGGTTTATACGACATACCCTTCTGAAGCCTCTGTCCCGAGCTGCCCTAACGACTATTAAGAGGCAGAAGCGGTTGATGGTTATCCATGCATTCGACTACTTAATCTTTCTGGAGAAATTGGCTGTTCAAGTAGATCCTGGACGAGAAAAGGTTGTAGTTCCAATGATTAACTTCAAAGATGCTAATGAGATATTGCAGCCATCTGCAATTTTAGTTTCAATGGATGAAATCTCGAGTTTCTTTACTAGACTACAGGAAGATTTGCATTTTGCAAATAATGTTGGCGGTGTTTTAATCGAACCAGGAACTGAAATACAAAATAGAATGGAAGGATTTTCTCCTGCCCAAAAGTTTCCCCAAGCTAAATTTGCTCCCTATAAAAAAATTGACTATGAATGGAACCCAATTGCTGCTTCAAAAAATGTGAAGAATAAGAAAAATTACATATCTAATGTTGCTGAATTTGATCTGGTGATGCAGACAACTAAGGCTGGAACTCATAATTCAATGTCTTGTTTGAAAGAAGAAACATGCCTTCCGTTAGGTGGATACAGTGTCTGGTCATCACTTCCTCCAATCAATACTTCTTCCTCTGATCAATCTAAGCCCGTCATTCTCACAGTAGCTTCAATGGATTCTGCCTCTTTCTTCCGTGATAAAAGCATTGGTGCAGACTCCCCCATCTCTGGCTTGATTGCGTTGCTGGCTGCAGTTGACGCACTTTCCCATGTGGAGGGATTGGATGATCTTCATAAACAGCTTGTTTTTGGTGTCTTCACTGGAGAGTCCTGGGGCTACCTTGGTAGTCGGAGATTTTTGCTTGAACTTGATCTACAGTCCGATGCTGTCAGTGGCCTTAACAATAGGTTAATTGATACGGTTTTTGAAATTGGATCTGTTGGAAAGAGCTCCAGTCATGGATTTGGAAAGTTTTTTGCTCACATGACAGAGGTTTCATCTTCAAAGAATGAGACATGGAATGCCTTGAAGCTTGCTCAAGAGTCACTTCCATCAGAGAACATAAAAGTCTCACCAGCTAGTACTGCAAATCCAGGGATACCACCATCTTCCTTGATGGCTTTTCTGGCAAAGAACCCGCAAATCTCTGGGGTGGTATTAGAAGACTTTGATACTAGCTTTACCAATAAATTTTACCAGAGTCAGCTCGATGATTTACATAATATAAACTCATCAGCTATTGAAGCAGCTGCTTTACTTGTTGCCCGAAGTCTTTACATTCTTGCAACCAACAAAAAGGAATTGAGTAGGTCTGCCCTAACTGCTATCAAAGTGAACACCTCGTTGGTTGAAGAGCTTATAGGATGTCTTCTGAATTGTGAGCCGGGTCTCTCTTGTGAGTTGGTGAAGAGATATATTTCTCCCTCCAGTGTTTGTCCAAACCATTACGTTGGTGTTATCCTTGATGAACCTTCCTCTACTCCTTATCCTGGTTATGTTCATGACGTTTCAAGATTTGTTTGGAACTTTTTGGCTGACAGAACATCTAATCCTAAAGAGAATACTATCTCAGTCTGTTCACAAAATTGTGATGACAAAAGTGAGGTGTGCATTGGAGCAGAGACTGGAAAGGGAACTTGTGTTATATCAACCACCAGGTATTTATCTTCTATTAAGAGGTCGGATGTTTGTCACCCTATCTGTTTGACTGCGAAGGTGTCTCGAGGAAGGATTGCCCCTAGAGAAGAGTGTGTTGACGCCTGTAATGTAGAGGTGTTCGTCCCAGCATACTCAACAAGATTGAAGTTCGAATCTGGATATTGGAACGTGCTTCCTCCAAATTCGTCAGACCCGCTTGGGGCTGTCGATCCAGTTTGGACAGAGAGCAATTGGAATACCATAGGACTCCGAATGTATACCATCCAAGCTACTGCTTATGATCGTTTTGTTTTACTTGGAGGCATTACTACCACAATCTTAGCTTATTTTGCAATAGTAGCCGTGCAGCATCTACACATGATTTACTTGCCTGATCATTACAGAAACAGAAAAGCCATCGACGAGCTCGAAGGCAGGATGGATTTTATGATGGATGGTCGTGGGGGTTATGGCGGTGGGTCAGCTGATGAACAAGAAGCTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCGTTGAGGAATGTCATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAGGAAGAACGGCAGCGCAATCTACAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGAAAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCACTTGATTTGTCACCAAGAAGTTCCCTTACCCAAATTGTTGCAAGTCCCGCAGTCGATCTTATTTCTGATCCTGTAATATTAGATGGAGCAGCAGCACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAGTCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCTTGAATGATGGGAGGTATGTTCTCCATCGTGACAGCTACGACAAAATATTTCCTAGACCCAATCACTTCAAATCTTCTAGTGCTCGTACTGAATCATCGAAAGCTTCAGGAGTTGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACCATCATTATAAATGCAGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACATTGTCAGCAGATTGAGCTTGGCGTCTGGGTAATCGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCCGGGTGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACCATGGCATATGGAGCCGACCGATGGCTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGTAGGAGAAGCATCATGAAGCTGTCACATAGAATGGTCAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGTTATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGTTCAGAACTGGGGCAGCCCAGTGGGACAGTTGTTAGTGCGGCTACATCTCTTTGGCTTCCCCTACAACCTGAAATCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGAAACCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCAGGAAACTTGATATCGATAATTCGGCAGCCATACGTCCCGACTGAGAACAACATGCTGATTCTTCAAGAAAGCTGTATAGATCCGCTAGGATCCTTGGTGATATATGCGCCCATCGACATGCCTGCTATGAACATTGCAACAAGTGGTCAGGATCCATCAGAGATAGCAATACTTCCATCAGGGTTCGTAATCACAGGGGATGGCCGTACTCATTCAGGAATCGGAGCTTCGACGAGTGCTACCTCGGGGAGGCCGAGCGGGTCTCTGGTAACCATAGCTTTCCAGATATTGGTGTCCAGCGTATCATCTTCAAAACAGCTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATCAGTGCCACAGTTCAGAGAATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 4428 42.66 MFKQKGLSIFLLQSLLIALWLKGTLFEAIRCDFDTLYLHVTIEWFVVRALFAWTLVSLLPLKFLLHIHNSFLTNGDTVPSPRKLILWFIRHTLLKPLSRAALTTIKRQKRLMVIHAFDYLIFLEKLAVQVDPGREKVVVPMINFKDANEILQPSAILVSMDEISSFFTRLQEDLHFANNVGGVLIEPGTEIQNRMEGFSPAQKFPQAKFAPYKKIDYEWNPIAASKNVKNKKNYISNVAEFDLVMQTTKAGTHNSMSCLKEETCLPLGGYSVWSSLPPINTSSSDQSKPVILTVASMDSASFFRDKSIGADSPISGLIALLAAVDALSHVEGLDDLHKQLVFGVFTGESWGYLGSRRFLLELDLQSDAVSGLNNRLIDTVFEIGSVGKSSSHGFGKFFAHMTEVSSSKNETWNALKLAQESLPSENIKVSPASTANPGIPPSSLMAFLAKNPQISGVVLEDFDTSFTNKFYQSQLDDLHNINSSAIEAAALLVARSLYILATNKKELSRSALTAIKVNTSLVEELIGCLLNCEPGLSCELVKRYISPSSVCPNHYVGVILDEPSSTPYPGYVHDVSRFVWNFLADRTSNPKENTISVCSQNCDDKSEVCIGAETGKGTCVISTTRYLSSIKRSDVCHPICLTAKVSRGRIAPREECVDACNVEVFVPAYSTRLKFESGYWNVLPPNSSDPLGAVDPVWTESNWNTIGLRMYTIQATAYDRFVLLGGITTTILAYFAIVAVQHLHMIYLPDHYRNRKAIDELEGRMDFMMDGRGGYGGGSADEQEASNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLTQIVASPAVDLISDPVILDGAAAPYQSRGINDLENALMLETAATALEELVRLLRIDEPLWMKTLNDGRYVLHRDSYDKIFPRPNHFKSSSARTESSKASGVVTMSAIQLVDFFLDADKWADLFPTIIINAETFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTMAYGADRWLFTLQRMCERLAYTFRDCAPSHELGGVLTSPEGRRSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNLISIIRQPYVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNIATSGQDPSEIAILPSGFVITGDGRTHSGIGASTSATSGRPSGSLVTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 1475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3590233 3620642 + Lsi05G002760.1 Lsi05g00276 662768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00276 1475 ProSiteProfiles 'Homeobox' domain profile. 789 849 IPR001356 GO:0003677
Lsi05g00276 1475 Gene3D - 779 866 - -
Lsi05g00276 1475 SUPERFAMILY Homeodomain-like 780 850 IPR009057 -
Lsi05g00276 1475 ProSiteProfiles START domain profile. 980 1214 IPR002913 GO:0008289
Lsi05g00276 1475 Pfam Homeodomain 792 847 IPR001356 GO:0003677
Lsi05g00276 1475 SMART START_1 989 1211 IPR002913 GO:0008289
Lsi05g00276 1475 SUPERFAMILY Bet v1-like 1232 1436 - -
Lsi05g00276 1475 SUPERFAMILY Zn-dependent exopeptidases 262 500 - -
Lsi05g00276 1475 Gene3D Zn peptidases 229 517 - -
Lsi05g00276 1475 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 781 1470 IPR042160 -
Lsi05g00276 1475 CDD START_ArGLABRA2_like 985 1210 - -
Lsi05g00276 1475 Gene3D - 989 1193 IPR023393 -
Lsi05g00276 1475 Coils Coil 891 918 - -
Lsi05g00276 1475 Pfam START domain 991 1211 IPR002913 GO:0008289
Lsi05g00276 1475 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 781 1470 - -
Lsi05g00276 1475 MobiDBLite consensus disorder prediction 774 795 - -
Lsi05g00276 1475 SMART HOX_1 791 853 IPR001356 GO:0003677
Lsi05g00276 1475 Pfam Nicastrin 289 490 - -
Lsi05g00276 1475 ProSitePatterns 'Homeobox' domain signature. 824 847 IPR017970 GO:0000981|GO:0006355
Lsi05g00276 1475 SUPERFAMILY Bet v1-like 982 1213 - -
Lsi05g00276 1475 Coils Coil 848 868 - -
Lsi05g00276 1475 CDD homeodomain 792 850 IPR001356 GO:0003677
Lsi05g00276 1475 Pfam Nicastrin small lobe 132 224 IPR041084 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00024 Lsi-Chr2:283164 Lsi05g00276 Lsi-Chr5:3590233 0 dispersed
Lsi05g00276 Lsi-Chr5:3590233 Lsi05g02010 Lsi-Chr5:27152991 1.01E-166 dispersed
Lsi05g00276 Lsi-Chr5:3590233 Lsi09g01939 Lsi-Chr9:28175003 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25292 PF01852 START 2.60E-36 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00276 K09338 - csv:101205899 1336.63