Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00309 ATGGCGACAAAGATCGACGGAATCGAAGAGGAAGGAATTTCAAAGCTCGAAGAAGGCACTCTCGTTTCCGCCGTCACCCGTCTCTGTCCCTCGACTTCGGTCGTAATCATCCAAAAGGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATATACGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAATCCTGCTGTTACTCTCACCTTCGCACTTTTTCGTCGCTTCCCCTTCTGCCAGGTACCAATATACATAGGAGCTCAAGTAATGGGGTCCCTTCTGGCAAGCTGCACATTGGATCTAATGCTTGAAGTGACCCCGGAAGCCTTCTTTGGGACAGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTATCATAACATTTCTCTTGATGTTTGTCATCTCTGGCGTCTCCACTGATAACAGAGCCGTAGGAGAATTGGCCGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCGGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGGCAGTTCAAAGGATTATGGGTTTACATAGTAGGACCGTTGATCGGAGCGGTCACCGGAGGATTTGCCTATAACCTAATTAGATTCACAGACAAACCACTGCGGGAGATCGCCAAAAGTAGCTCATTCCTCACCGGCAGCCAGAAATCATAA 810 48.77 MATKIDGIEEEGISKLEEGTLVSAVTRLCPSTSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFCQVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEIIITFLLMFVISGVSTDNRAVGELAGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLIGAVTGGFAYNLIRFTDKPLREIAKSSSFLTGSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3961833 3965606 - Lsi05G003090.1 Lsi05g00309 662801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00309 269 Pfam Major intrinsic protein 32 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 Gene3D Glycerol uptake facilitator protein. 11 258 IPR023271 -
Lsi05g00309 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Lsi05g00309 269 PANTHER AQUAPORIN NIP2-1 28 258 IPR034294 -
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi05g00309 269 SUPERFAMILY Aquaporin-like 33 256 IPR023271 -
Lsi05g00309 269 PANTHER AQUAPORIN NIP4-1-RELATED 28 258 - -
Lsi05g00309 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00216 Lsi-Chr1:1972671 Lsi05g00309 Lsi-Chr5:3961833 1.20E-111 dispersed
Lsi03g01480 Lsi-Chr3:25765051 Lsi05g00309 Lsi-Chr5:3961833 5.11E-42 dispersed
Lsi03g01481 Lsi-Chr3:25767201 Lsi05g00309 Lsi-Chr5:3961833 2.50E-09 dispersed
Lsi05g00309 Lsi-Chr5:3961833 Lsi09g00101 Lsi-Chr9:900849 5.66E-62 dispersed
Lsi05g00309 Lsi-Chr5:3961833 Lsi03g01989 Lsi-Chr3:31267990 6.83E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00309 K09874 - csv:101215315 470.314