Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00329 | ATGGAGAATTTAATGGGTCTGCTAAGAATCCATGTGTTTAGAGGAGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTGAAGACTCGAGTAGTGAAGCAAAACATCAACCCAGAGTGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATATCCCAGTCAATGTGCTCGTATACGACAGAGACTTGTTTTCGCTCGACGACAAGATGGGGGATGCGGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTTCCAAGTGGAACCATTATAACAAAGGTTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGCTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG | 498 | 40.76 | MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNIPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKVQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4192568 | 4194395 | - | Lsi05G003290.1 | Lsi05g00329 | 662821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00329 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Lsi05g00329 | 165 | Pfam | C2 domain | 6 | 93 | IPR000008 | - | |
| Lsi05g00329 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE | 1 | 164 | - | - | |
| Lsi05g00329 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 164 | IPR044562 | - | |
| Lsi05g00329 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Lsi05g00329 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - | |
| Lsi05g00329 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - | |
| Lsi05g00329 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00502 | Lsi-Chr1:4116578 | Lsi05g00329 | Lsi-Chr5:4192568 | 5.04E-43 | dispersed | |
| Lsi02g00234 | Lsi-Chr2:2007664 | Lsi05g00329 | Lsi-Chr5:4192568 | 1.93E-61 | dispersed | |
| Lsi02g00943 | Lsi-Chr2:9334771 | Lsi05g00329 | Lsi-Chr5:4192568 | 5.43E-38 | dispersed | |
| Lsi04g01126 | Lsi-Chr4:14816237 | Lsi05g00329 | Lsi-Chr5:4192568 | 7.97E-63 | dispersed | |
| Lsi05g00329 | Lsi-Chr5:4192568 | Lsi09g00665 | Lsi-Chr9:7443141 | 2.68E-09 | dispersed | |
| Lsi05g00329 | Lsi-Chr5:4192568 | Lsi06g01282 | Lsi-Chr6:23371671 | 4.31E-76 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00329 | - | - | csv:101218477 | 321.627 |