Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00339 ATGATCTTTTCATGGAGGAAAAACAAATTGGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCAGGGGTCGTTTCCGGTTCGGAAATTGTGATTCCTTCGCATTATGTGTGTCCGATTTCGCTTGATTTGATGAAGGATCCTGTGATTTTGTCTACTGGGATTACTTATGATAGAGAGAGTATCGAGAAGTGGATTGAAGGGGGAAATTTTTCATGTCCTGTAACGAAACAGGATTTGATTAGTTTCGACCTAATCCCTAATCATGCTTTGAGAAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATATGGGATTGAGCGGATTCCGACGCCGCGGATTCCGGTCTCCCCGTATGAAGTTAAGGAGGTTTGTTCGAGAATCTCGGTTGCGACTCAAAGAAGTGACTCGAAGAGATGCAGTGAATTGATGGGTAAGATCAGGAATTGGGCGAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAAAAACATGTGGGTTTGTTGGAGGAGATTTTATTGGTTTTGCCTTGTGTGTTCCCAGTCGCCATCGAAGGCTTATCTAAGCTCGGATCTGCTGATTCTTTGAAATGCTTGGTTTCCTTCTTAATCGGTAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATAGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCTGAAGCTTTAGTTAGCATTATCAAGGAGCCTCTTTGCCCCTCTGCTACAAAATCATCCCTTACTGCCATTTTCTACATGATTTTACCATCAGATATTGGCGAGAAAATGGCATTGAAATTTGTGGAACTAGGCTTTGTCTCTCAGCTACTAGAATTTCTGGTAGATGCAGAGAAAAGCCTGTGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACAAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCTTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGAGAGAAGGGTGAGGATGAAGTGAGAGTTGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGGTTGGTTGTGGTGGTGACATGAAGGACAAGGTCACTGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGATTGTATTGATTCATCCATGCATTTTAATCGACTTGGTGGATCGAGCAAGATGTGCCATGCAAAAAAAAGGCTTTATGGGATTATGAGTGATGTCTCTGAACTTGGGAGAGTATCTGTAGTTGTCTGCACCAGATTTGAAACATCAACAAGAAACATGAGTTGGTCCTCATTACTGGATTATGTTAAACAAAGTGATTTTAATTTGTTACTACAGGAGGCTCTTGTACATTGTGTCTTGAAGTTCTGCAGAGGCCAAAACAAGAACATTACTCCATTAGTCGATGATAGGCATCTCAAATTGACCTTGACTGACATTCCTGACTGTTTAACTCTTAAGAGAGTAGCATTTATTTCAGTGATTGAGATGTTCCTTCCCTCGAATTTGTATAAGCGAACTTCGATTCGAGAAAGGAAGACCATACTGAATTGCTTGAGAGTCACCATGAGACAACACATGTCCAACTGCTGGCTAATTCTGATGGATTTTGCTGAGTGTCTATGGCTCGGCTCGGCTCGATTTCATGATAAGTTCAGAGAAAATGAGTACACTATGAGTTGTTTTGCTTATTGTGAATTTACTTTCTCATGTTTTACTGGTGTGTTGTCCTTGCTAGACGAGGAGCTACTTGAGGATCTGGAGGTTGGATTTCTTGGCTACTCAATGCAGAGGTGA 1953 41.27 MIFSWRKNKLGFLTKLKKELPGVVSGSEIVIPSHYVCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLISFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVSPYEVKEVCSRISVATQRSDSKRCSELMGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLPCVFPVAIEGLSKLGSADSLKCLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIKEPLCPSATKSSLTAIFYMILPSDIGEKMALKFVELGFVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYKNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGEDEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFNRLGGSSKMCHAKKRLYGIMSDVSELGRVSVVVCTRFETSTRNMSWSSLLDYVKQSDFNLLLQEALVHCVLKFCRGQNKNITPLVDDRHLKLTLTDIPDCLTLKRVAFISVIEMFLPSNLYKRTSIRERKTILNCLRVTMRQHMSNCWLILMDFAECLWLGSARFHDKFRENEYTMSCFAYCEFTFSCFTGVLSLLDEELLEDLEVGFLGYSMQR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4302023 4305085 + Lsi05G003390.1 Lsi05g00339 662831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00339 650 Gene3D - 122 417 IPR011989 -
Lsi05g00339 650 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Lsi05g00339 650 CDD RING-Ubox_PUB 35 77 IPR045210 -
Lsi05g00339 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 107 IPR013083 -
Lsi05g00339 650 SUPERFAMILY ARM repeat 210 520 IPR016024 -
Lsi05g00339 650 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Lsi05g00339 650 PANTHER WDSAM1 PROTEIN 25 438 IPR045185 GO:0061630
Lsi05g00339 650 SUPERFAMILY RING/U-box 26 107 - -
Lsi05g00339 650 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lsi05g00339 650 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 25 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00991 Lsi-Chr4:10800605 Lsi05g00339 Lsi-Chr5:4302023 1.98E-154 dispersed
Lsi05g00219 Lsi-Chr5:2970010 Lsi05g00339 Lsi-Chr5:4302023 1.32E-64 dispersed
Lsi05g00339 Lsi-Chr5:4302023 Lsi10g01136 Lsi-Chr10:15647612 1.75E-48 dispersed
Lsi05g00339 Lsi-Chr5:4302023 Lsi03g01816 Lsi-Chr3:29647859 3.02E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00339 - - csv:101220059 827.78