Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00350 CAACAAACAAAACCCACTTCATTTTATTCTTCCTCCATTGGAGCCATTCCACAAGCTTTTCACAATACCCATGTGGGTTTGTTAGCAATTTTCTCAATTTGGGGACAAAACAACCAAAATATGGAGTTCCCGCAAGGAATTTTAGCGGCGGCGGTTCTGGGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCGGCGCTGGTGGGTTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCTCCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAATGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTTTCCGGTGAGCTTCCGATGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGAAAGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGAAATCTTTACTTGCAGGGGAACTTGTTTTCCGGCGAGATTCCAGCGTTTCTGTTCGATTTGCAGAATCTGGTTCGGTTGAACATGGCGAACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACCGGTGTGATTCCTGAGTTAAATCTCCCTCTTGAGCAATTTAATGTCTCGTTTAATCGATTGAATGGTTCGATTCCCTCTAAGCTCTCTAGTTTTCCGGCGAGTGCTTTTGAGGGGAATGTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCAACAGCCACCGAGCCCGGTCGAAAGTCGAAGCTCTCCGGCGGGGCAATTGCTGGAATTGTGATTGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAGGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGCGGTGCCGGGAGAGAAGACGACGACAGCGGAAGGGAGTAGCCAAAGGATAAGCATAGATCATTTGACTGCAGCGAAATCCTCGGCAAAGGGCGGCGAAAAGGATAAAAGATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGATTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGACGTTCGGGACGGCGTATAAGGCGACATTAGAGACGGGGATGGTGGTGGCCGTGAAGCGGTTGAAGGAGATGACGGCGGCGGAGAAGGAGTTCAGGGAGAAGATGGAGGAGGTGGGGAGGATGAAGCATGAGAATTTAGTCCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTAGAGTCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTCGGAGTCGGTCGTGGGATTCATTACCTTCATTCTCAAGGCCCTACCATCTCCCATGGCAACATCAAATCCTCTAACATTCTCCTCACCAGATCATACGAAGGATATGTCTCCGACTTTGGCCTTGCACAATTAGCCATGTCCCCCTTAGCTCCAAGTCGTGTTGCTGGGTACCGAGCCCCAGAGATCACCGATTCTCGAAAGGTATCACAGAAGGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGGAAAACCTCCTACACATTCTATTTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGATACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTTGCGCTACAATGCACGGTCCCGTATCCCGATAATCGTCCTGGAATGGACGAGATCGTTCAACGTATCGAAGAACTCTGTCGATCGACCTTGCAAAAAGAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAG 2025 48.25 QQTKPTSFYSSSIGAIPQAFHNTHVGLLAIFSIWGQNNQNMEFPQGILAAAVLGFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRNGVFELRLPAMGLSGELPMGLGNLTQLQTLSLRFNALSGKIPADFANLRGLRNLYLQGNLFSGEIPAFLFDLQNLVRLNMANNNFSGEISSGFNNLSRLATLYLQNNQFTGVIPELNLPLEQFNVSFNRLNGSIPSKLSSFPASAFEGNVLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVAVPGEKTTTAEGSSQRISIDHLTAAKSSAKGGEKDKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLESGRTPLNWEARCGIALGVGRGIHYLHSQGPTISHGNIKSSNILLTRSYEGYVSDFGLAQLAMSPLAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKPPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGMDEIVQRIEELCRSTLQKESEAIDNDGNNGISTQFHSLNSPHPPSAE 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4467542 4469861 + Lsi05G003500.1 Lsi05g00350 662842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00350 675 CDD STKc_IRAK 384 639 - -
Lsi05g00350 675 PANTHER OS05G0588300 PROTEIN 61 652 - -
Lsi05g00350 675 ProSiteProfiles Protein kinase domain profile. 378 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00350 675 SUPERFAMILY L domain-like 86 245 - -
Lsi05g00350 675 MobiDBLite consensus disorder prediction 313 338 - -
Lsi05g00350 675 Pfam Protein kinase domain 381 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00350 675 Gene3D Ribonuclease Inhibitor 224 263 IPR032675 -
Lsi05g00350 675 Gene3D Phosphorylase Kinase; domain 1 345 452 - -
Lsi05g00350 675 MobiDBLite consensus disorder prediction 650 675 - -
Lsi05g00350 675 Coils Coil 411 431 - -
Lsi05g00350 675 PANTHER INACTIVE RECEPTOR KINASE-RELATED 61 652 - -
Lsi05g00350 675 SUPERFAMILY Protein kinase-like (PK-like) 382 641 IPR011009 -
Lsi05g00350 675 Gene3D Transferase(Phosphotransferase) domain 1 453 662 - -
Lsi05g00350 675 Pfam Leucine rich repeat N-terminal domain 66 103 IPR013210 -
Lsi05g00350 675 Gene3D Ribonuclease Inhibitor 66 221 IPR032675 -
Lsi05g00350 675 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00246 Lsi-Chr2:2085090 Lsi05g00350 Lsi-Chr5:4467542 0 dispersed
Lsi05g00350 Lsi-Chr5:4467542 Lsi09g00907 Lsi-Chr9:11033095 0 dispersed
Lsi05g00350 Lsi-Chr5:4467542 Lsi06g00909 Lsi-Chr6:18797364 0 transposed
Lsi05g00350 Lsi-Chr5:4467542 Lsi11g00286 Lsi-Chr11:2954323 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83629 PF00069 Pkinase 2.00E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00350 - - csv:101221942 1101.66