Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00382 | ATGCGGATGAGTTGTAATGGTTGTAGAGTACTTCGTAAAGGTTGCAGTGAAAATTGCAGTATCCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTTGCTAAGTTCTACGGCCGTGCTGGTCTCATGAACCTCATCAACGCTGGTCCTGATCATCTACGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGACGGATTGTCAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCTGTTGAGGCCGTACTTAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCGACTACTGGCGATGGACCGCCGTTAAAGGCCTACGATATTCGTCATGTTTCCAAGGATGAAAACTCCGTCGCATCCAACGATGGCGGAGCCAATAGGCGAGTCAAGACTCGGTGCCGGTTTAAGCGGTCTGCTGTGAAGGCGAAAGCGAGTAAGGGAGTCGCCTCCACTGTCGATGAGTCGACTCGGCGACTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGCGAGTCGTCGTTGAGTCACCAATCGGATTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGTATGATTTCAGTAGAGACGGCGGAGGTTTCTCCTCCTCCGGTGCCGTCGGTTTTGTTCCGATCGGAATCCACTTCCGTAGTGAAATCCACATTCCACGACGGTGGCGCAGTGCCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAACCGGCGTTACGTGCTCAGCACGTGATTCCAATGAAGAAACGAAAGATAGAGGCCGACATTGGGTTCAGGCCCAATAACGACACGTGCAATACTGTTTTGGGGCTTGATTTTTCAGCCTGA | 921 | 51.68 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKASKGVASTVDESTRRLCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPVPSVLFRSESTSVVKSTFHDGGAVPIPQSELALELTLGMEPALRAQHVIPMKKRKIEADIGFRPNNDTCNTVLGLDFSA | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4824488 | 4825497 | + | Lsi05G003820.1 | Lsi05g00382 | 662874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00382 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
| Lsi05g00382 | 306 | MobiDBLite | consensus disorder prediction | 184 | 229 | - | - | |
| Lsi05g00382 | 306 | MobiDBLite | consensus disorder prediction | 199 | 215 | - | - | |
| Lsi05g00382 | 306 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
| Lsi05g00382 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
| Lsi05g00382 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 302 | - | - | |
| Lsi05g00382 | 306 | PIRSF | AS2 | 1 | 300 | IPR017414 | - | |
| Lsi05g00382 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 302 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00909 | Lsi-Chr1:7333830 | Lsi05g00382 | Lsi-Chr5:4824488 | 5.22E-55 | dispersed | |
| Lsi04g00252 | Lsi-Chr4:2584790 | Lsi05g00382 | Lsi-Chr5:4824488 | 3.85E-67 | dispersed | |
| Lsi04g01494 | Lsi-Chr4:22637568 | Lsi05g00382 | Lsi-Chr5:4824488 | 3.19E-49 | dispersed | |
| Lsi05g00382 | Lsi-Chr5:4824488 | Lsi02g01015 | Lsi-Chr2:10457656 | 8.86E-09 | dispersed | |
| Lsi05g00382 | Lsi-Chr5:4824488 | Lsi06g01333 | Lsi-Chr6:23917405 | 1.51E-92 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25303 | PF03195 | LOB | 1.80E-24 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00382 | - | - | csv:101208245 | 527.324 |