Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00383 ATGGCGATTGTGATTTTTCTAACAACACTTCTGGTGATTTTTATTTCATCACTTGCAAAGATTGCATATGATACAATCTCATGCTACTGGCTGACCCCAAGAAGAATCAGGAAGAAGATGGAGAAACAAGGTGTTCGTGGCCCCGAACCCCGACCGCTGCTCGGAAACATCCTTGATGTAGCATCGCTTGTGGCAAAATCAACCGCCAACGACATGAACTCGATCGATCACGACATCGTCGATCGTCTATTGCCTCATTACACCACGTGGACAAAGCAATACGGAAAGAGGTTTGTATATTGGAACGGGACGGAGCCGAGGCTATGTTTGGCGGAGACGGAATTGATAAAAGAAGTATTGAGTAAAAACAGCAATGTGTGTGGGAAATCATGGTTGCAAAGACAGGGAACCAAACATTTCATTGGAAAAGGATTGTTGATGGCAAATGGAGAAGATTGCTATGCGGGGATGATGGTGGAATGCACTAAGAAAATGATCCAATCACTGGAGACTGAGCTTGACTCAGGCCGGACCGAGTTTGAGATCGCCGATTACATGAAACAACTCACCGCCGACATCATTTCTCGGACCGAGTTCGATGCCAACTCCGACAAGGGCAAAGAAATCTTCCATTTGCTCACTCTTCTCCAGCGTCTCTGCGCCCAAGCCAGCCGACACCTCTGCCTCCCCGGTAGCCGGTTTTTTCCAAGTAAATACAACAGAGAAATAAAGTCATTGAAAATGGAGGTAGAGAGGTTGTTAATGGAGATTATTCAGAGCAGAAAAGATGGTGTGGAGATTGGAAGAAGTACTTGCTATGGAAGTGATTTGTTGGGAATGCTATTGAATGAAATGCAGAGGAAAAGAGAAGATAATGGTTTGAGCTTGAACTTGCAGCTCATAATGGATGAATGCAAAACTTTCTTCTTTGCTGGCCATGAAACCACTGCCCTTTTGCTAACTTGGACCATCATGTTGCTTGCCACTAACCCTAATTGGCAACACAAGGTTCGACATGAAGTCAATCAAGTTTGCAATAATAATGGTGGAACTCCCTCTGTTGAACATCTCTCTAAGCTTACTTTGCTAAACATGGTGATAAATGAATCACTAAGGCTTTACCCTCCGGCGACGGTGCTTCCGAGAATGGCGTTCGAGGACATAAAAGTAGGAGATTTAGAGATCCCAAAAGGGCTATCAATATGGATTCCAGTGCTTGCAATTCATCATAGTGAAGAGTTGTGGGGAAAAGATGCAAATGAGTTCAAACCAGAAAGATTTGCCTCAAAACCTTTTAGTGGTGGACGTTTCATTCCATTTGCATCTGGACCAAGAAACTGCATTGGCCAAGGCTTTGCATTGATGGAAGCTAAGATCATATTGGCTATGTTTCTCTCAAAGTTTAGCTTCACTATTTCAGATTCTTATCGCCATGCTCCTGTTAGTGTTCTCACCATACAGCCTAAGTATGGAGTTCAAGTTTATTTGACTCCAATCAATTCTTAG 1506 43.49 MAIVIFLTTLLVIFISSLAKIAYDTISCYWLTPRRIRKKMEKQGVRGPEPRPLLGNILDVASLVAKSTANDMNSIDHDIVDRLLPHYTTWTKQYGKRFVYWNGTEPRLCLAETELIKEVLSKNSNVCGKSWLQRQGTKHFIGKGLLMANGEDCYAGMMVECTKKMIQSLETELDSGRTEFEIADYMKQLTADIISRTEFDANSDKGKEIFHLLTLLQRLCAQASRHLCLPGSRFFPSKYNREIKSLKMEVERLLMEIIQSRKDGVEIGRSTCYGSDLLGMLLNEMQRKREDNGLSLNLQLIMDECKTFFFAGHETTALLLTWTIMLLATNPNWQHKVRHEVNQVCNNNGGTPSVEHLSKLTLLNMVINESLRLYPPATVLPRMAFEDIKVGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFKPERFASKPFSGGRFIPFASGPRNCIGQGFALMEAKIILAMFLSKFSFTISDSYRHAPVSVLTIQPKYGVQVYLTPINS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4853695 4858123 - Lsi05G003830.1 Lsi05g00383 662875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00383 501 Gene3D Cytochrome P450 29 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PANTHER CYTOCHROME P450 FAMILY MEMBER 4 495 - -
Lsi05g00383 501 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS E-class P450 group I signature 405 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PANTHER CYTOCHROME P450 FAMILY PROTEIN 4 495 - -
Lsi05g00383 501 Coils Coil 243 263 - -
Lsi05g00383 501 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 Pfam Cytochrome P450 157 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g00383 501 SUPERFAMILY Cytochrome P450 47 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00383 Lsi-Chr5:4853695 Lsi04g01645 Lsi-Chr4:23913684 2.84E-110 dispersed
Lsi05g00383 Lsi-Chr5:4853695 Lsi03g00243 Lsi-Chr3:3057964 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00383 K10717 - csv:101213604 932.939