Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00389 ATGGACGCCGATGCCAACTCTCCCAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTCTACCGCGGGTTGACAGCTGAGGAACTAGAGCGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGCATCGAGAAGCTAAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGTTTTCGACAGAAAATTAATCATTGGTTCGCACCAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCACGACCTATGCAAAATATACCCTAATGTTACTGTCATTCAGTCAACATTTCAGATTGTTGCACTTTATTACCTACTAGAATCAATGTTCACCGGCCTTAAGCTGGAAAAGATTGTGAAGACTGAGAGTTGTGCAGCAGTAGACTCAAGGACTAAGGTTGTGGAGCACGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGCGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAGCAGCTGATATACGAGAAATTACCCAGTGATATATCAGAGCGACATGTCCTGCTCCTAGATCCCGTTCTCGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAGAAGGGAGTTCCAGAAGCGCACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAAAGATTTCCATCCTTGAAAATTGTCACTTCTGAGATCGATGTCGGGTTGGATGAAAATTATCGTGTCATACCCGGTCTGGGTGAATTTGGCGATCGTTACTTTGGTACCGACGATTAA 1245 44.42 MDADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQKINHWFAPDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIVALYYLLESMFTGLKLEKIVKTESCAAVDSRTKVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4921656 4931571 - Lsi05G003890.1 Lsi05g00389 662881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00389 414 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 4 108 IPR029930 GO:0004849|GO:0044206
Lsi05g00389 414 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 116 411 IPR029930 GO:0004849|GO:0044206
Lsi05g00389 414 PRINTS Uridine kinase signature 86 101 - -
Lsi05g00389 414 PRINTS Uridine kinase signature 11 28 - -
Lsi05g00389 414 PRINTS Uridine kinase signature 41 52 - -
Lsi05g00389 414 SUPERFAMILY PRTase-like 243 413 IPR029057 -
Lsi05g00389 414 CDD PRTases_typeI 270 385 IPR000836 -
Lsi05g00389 414 Pfam Phosphoribulokinase / Uridine kinase family 115 175 IPR006083 GO:0005524|GO:0016301
Lsi05g00389 414 Pfam Phosphoribulokinase / Uridine kinase family 13 102 IPR006083 GO:0005524|GO:0016301
Lsi05g00389 414 Gene3D - 191 412 IPR029057 -
Lsi05g00389 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 180 IPR027417 -
Lsi05g00389 414 PANTHER URIDINE KINASE 4 108 - -
Lsi05g00389 414 CDD UMPK 13 187 IPR000764 -
Lsi05g00389 414 Gene3D - 7 190 IPR027417 -
Lsi05g00389 414 Pfam Uracil phosphoribosyltransferase 242 412 - -
Lsi05g00389 414 PANTHER URIDINE KINASE 116 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00389 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01465 Lsi-Chr1:12754578 Lsi05g00389 Lsi-Chr5:4921656 6.15E-07 dispersed
Lsi02g01799 Lsi-Chr2:23782932 Lsi05g00389 Lsi-Chr5:4921656 0 dispersed
Lsi05g00389 Lsi-Chr5:4921656 Lsi06g01374 Lsi-Chr6:24324051 1.02E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00389 Lsi_Chr05 FPKM 12.489975 17.317884 11.087367 11.819027 11.852108 9.461031 10.652933 15.728371 15.231407 15.50262