Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00391 ATGGTTCAGCCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGAAGACGACGATGGGGATCTAGATTTTCTCCTACCGCCGAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTCGAGTATCAGTTTAACGAAGATGGTAATAAGATCAAAATCACAACGACCACTCGTACACGCAAGCTTGCCCATGCTCGCCTTAGCAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTCGGCAGTCGGCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGAGACCCGCTAGCTCAACTTGGTAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCCGATGGATTGGATAAGCCTGTTGCACCAGAGGCTACTACTGCTGCTCCTGGTGCAACAAAGGGAGCGTATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGCAGGAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAATCGTGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCGACTTAA 867 49.48 MVQPTNPSKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKIKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4964508 4965901 + Lsi05G003910.1 Lsi05g00391 662883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00391 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Lsi05g00391 288 Gene3D - 179 288 IPR012677 -
Lsi05g00391 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Lsi05g00391 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Lsi05g00391 288 MobiDBLite consensus disorder prediction 174 195 - -
Lsi05g00391 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Lsi05g00391 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Lsi05g00391 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lsi05g00391 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lsi05g00391 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Lsi05g00391 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Lsi05g00391 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00033 Lsi-Chr2:363406 Lsi05g00391 Lsi-Chr5:4964508 0 dispersed
Lsi05g00391 Lsi-Chr5:4964508 Lsi04g01255 Lsi-Chr4:19552123 5.19E-11 dispersed
Lsi05g00391 Lsi-Chr5:4964508 Lsi11g00147 Lsi-Chr11:1639159 6.55E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00391 K03248 - csv:101207022 539.65