Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00397 ATGGATATCGGCTTCGATCCCTCCGCTTCTCCTCTTCTCCGGCCGTCGATGGCGGCTCCGGCTGACCGGCTCCGCCCTGTTGCGAAGTTTTCCGGCCAGGGGATTCGTTTTGATGAGGATTCCGCGGAGACTCGGCCTCTGCTTTCGAGGATGCTGACTTATCCGATTGGGATTATTCACCACCAGTTGCGCCGCCGTCTCGGCGCCGGGAAGCCCCAAGTGCCGCGGCGTCAGCAGTCTTTTACTCGAGATTTTGGCCATGCAGCTGCGGAAACCCTTCTTATTACTCGGTTGAGCTTCACTCTCCTTCGATCTCTTGGGGTAGGGTACCGGTGGGTCGTAAAATTAACTGCCCTTGCAGTGTATGCCATTCTTCTTATGCCCGGTTTTCTTCAAGTTATGTATGATTATTACTTCTCAAGTCAGGTTCGGAGGGATATTATTTATGGAAATCAACCGAGAAATAGCTTGGATTTGTATCTACCTACAAATACTGATAAAAAAAAACCAGTTGTGATATTTGTTAGCGGTGGAGCTTGGATTATTGGGTATAAAGCATGGGGAGCACTTCTAGGACTGCAGTTGGCAGAGAGAGACGTCATTGGGGACTGGGAGACTGCTGACTATGGAGGAGATCCGGACAGAATCTTTCTGATGGGACAATCAGCTGGTGCACATATTTCCGTTTGTGCCCTATTGGAGCAAGCTATCAAAGAAGCCAGAAAAGGAGAGAGTGTAGATTGGAGTGTCTCCCAAATAAAAGCTTATTTTGGTTTATCTGGAGGGTATAACTTGTTGAAACTAGTTGATCACTTTGATAGTCGGGGTCTATATCGTTCCGTCTTTTTGAGCATAATGGAAGGTGAAGAATCTTTGTCCCAATTTTCCCCGGAAATAAGAATTCAAGATCCTAGCGTTAGTGATGTTGTATCCAGTTTACCTCCTTTTGTTCTTTTCCATGGCACTGGCGATTATTCAATCCCATCAGATGCCAGTGAATCTTTTGTGGAGACACTTCGAAAAGCAGGTGCACAAGCTGACCTATTTCTCTATGAGGGAAAAACTCATACAGATTTATTCCTTCAAGATCCTTTTCGGGGAGGCAATTATGAACTTTTTGATCAAATAATTGCCATATTACATGCTGGTGATGAGGAAGCTCTCGCAAAGGATTCTATGGCGCCACCAAACCCGCGCCTTGTTCCAGAGATTTTGATAAGATTGGCACGAATGGTTAGCCCTTTCTGA 1248 46.23 MDIGFDPSASPLLRPSMAAPADRLRPVAKFSGQGIRFDEDSAETRPLLSRMLTYPIGIIHHQLRRRLGAGKPQVPRRQQSFTRDFGHAAAETLLITRLSFTLLRSLGVGYRWVVKLTALAVYAILLMPGFLQVMYDYYFSSQVRRDIIYGNQPRNSLDLYLPTNTDKKKPVVIFVSGGAWIIGYKAWGALLGLQLAERDVIGDWETADYGGDPDRIFLMGQSAGAHISVCALLEQAIKEARKGESVDWSVSQIKAYFGLSGGYNLLKLVDHFDSRGLYRSVFLSIMEGEESLSQFSPEIRIQDPSVSDVVSSLPPFVLFHGTGDYSIPSDASESFVETLRKAGAQADLFLYEGKTHTDLFLQDPFRGGNYELFDQIIAILHAGDEEALAKDSMAPPNPRLVPEILIRLARMVSPF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4998719 5006218 + Lsi05G003970.1 Lsi05g00397 662889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00397 415 SUPERFAMILY alpha/beta-Hydrolases 123 376 IPR029058 -
Lsi05g00397 415 Pfam alpha/beta hydrolase fold 207 356 IPR013094 GO:0016787
Lsi05g00397 415 PANTHER ARYLACETAMIDE DEACETYLASE 208 379 - -
Lsi05g00397 415 PANTHER ARYLACETAMIDE DEACETYLASE 54 201 - -
Lsi05g00397 415 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 208 379 - -
Lsi05g00397 415 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 54 201 - -
Lsi05g00397 415 Gene3D alpha/beta hydrolase 136 202 IPR029058 -
Lsi05g00397 415 Gene3D alpha/beta hydrolase 204 363 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00397 Lsi-Chr5:4998719 Lsi09g01082 Lsi-Chr9:17186268 7.71E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00397 K15889 - csv:101206540 561.992