Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00431 ATGGTCATTGGTGATGGAGTGCTAACTCCTGCAATTTCAGTTCTTTCCTCAGTTTCAGGCTTACAAGTTACTGAAGCAAAATTGACCAATGGGACACTCCTTTTGATTGCCTGTGCCATATTGGTTGGTTTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATTTTCTCCATTGGTCTGTACAACATAATACATTGGAACCCAAGTATTATTCGTGCAATTTCCCCTCATTATGTTATCAAGTTCTTAAGAGTTACTGGTAAAGATGGATGGCTTTCTCTCGGAGGGGTTCTTCTGGCCATAACTGGTACTGAGGCGATGTTTGCAGATCTTGGTCATTTCACTGCTTTGTCGATAAGGATTGCATTTGCATTTGTTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTGATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGATCCTGTATTTTGGCCTGTTTTTGTTATTGCCACCCTTGCAGCTATTGTGGGGAGCCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTGAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTAATGGTCCTCACTCTTTCCATTACAATAGGGTTTCAAGATACGACACTGATTGGAAATGCTTATGGTAAGTCACCTAACAGTAACACAATCTATGTAAGTGGTTACAATTACCAACTGCTTTTAAAGGAACCAACGTCATATTGTAGGAACTTCTCTTCATCTTTGCCTTTGCTCTCCTTTGGTGCAAACAAAGTCGTCAGCTTCTTAGGAAAAGGGACATTGAAAGTTATTTCAATTATAGCATTTGATGGAGTGGGGATTCAATTAAGGTATTTTAATTTCTTCCTGCTTGCAACGTTTACGCCTTTCCTGTACATAACTTTGTTGTTCGTGGTTCGTTCAGGACTCGCCTGCATGACAGTTATGTTCACGACGACATTTCTTATGGCACTTGTCATAGTATTTGTTTGGCAAAAAAGTATCCTGCTAGCCGCACCTTTTCTCATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTATCAGCAGCAATCATAAAAGTGCCTCAAGGAGGGTGGGTCCCGCTTGTGCTATCAGCCTTTTTTATGATTGTTATGTTTGTCTGGCATTATGGCACTCGCAAGAAATACAACTTTGATCTACACAATAAAGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCTAGCCTCGGTATAGTTCGTGTCCCTGGGATTGGCCTCATATACTCGGAATTGGCAACAGGAGTACCCGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCATTTCACAAGGTTTTAGTGTTTGTTTGTGTAAAGTCTGTTCCAGTTCCATATGTCTCGCCTGAAGAACGTTTTCTGATAGGGAGAGTCTGTCCTAGACCATACCGCATGTATCGGTGCATAGTGAGGTACGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAACTGATACTAAACATTGCAGAATTTATTCAAATGGAGGCAGAGGAACCACAATTCGCAAGCTCTGAAAGTTCTTCAGTTGATGGGAGGATGGCAGTAATAAGCACTCGGAGTATACAATCAAGCTTGAGCTTAATAGTGTCAGGGCATGAAGAAATTGGTACCAGCAACTCCATCTATAGCAGCAAATCTGCCACACTCCAAAGTTTACGATCTGTGTATGAGGATGAGAATCCACAACTAAGAAGGCGGCAAGTAAGGTTTCAGCTATCTCCCACCCCTTCAATGGACCCTAGAGTTAGGGAAGAGTTAATAGACTTGATCCAAGCCAAAGAAGCCGGTGTAGCATATATAATGGGACACTCATACGTGAAGGCCAGAAGATCTTCGTCGTATTTGAAGAAGCTTGTGATAGATATCGGATACTCGTTCCTCCGAAAGAACTGCAGAGGCCCGTCTGTTGCGCTGAATATCCCTCACATCAGTCTAATCGAAGTGGGCATGATATATTATGTTTAG 2142 42.16 MVIGDGVLTPAISVLSSVSGLQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVIKFLRVTGKDGWLSLGGVLLAITGTEAMFADLGHFTALSIRIAFAFVIYPCLVVQYMGQAAFLSKNLDLFPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMVLTLSITIGFQDTTLIGNAYGKSPNSNTIYVSGYNYQLLLKEPTSYCRNFSSSLPLLSFGANKVVSFLGKGTLKVISIIAFDGVGIQLRYFNFFLLATFTPFLYITLLFVVRSGLACMTVMFTTTFLMALVIVFVWQKSILLAAPFLIFFWSVEGAYLSAAIIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFASSESSSVDGRMAVISTRSIQSSLSLIVSGHEEIGTSNSIYSSKSATLQSLRSVYEDENPQLRRRQVRFQLSPTPSMDPRVREELIDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5469034 5478139 - Lsi05G004310.1 Lsi05g00431 662923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00431 713 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 352 713 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi05g00431 713 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 261 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi05g00431 713 PANTHER POTASSIUM TRANSPORTER 4 1 261 - -
Lsi05g00431 713 PANTHER POTASSIUM TRANSPORTER 4 352 713 - -
Lsi05g00431 713 Pfam K+ potassium transporter 1 262 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi05g00431 713 Pfam K+ potassium transporter 352 531 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01031 Lsi-Chr4:11824195 Lsi05g00431 Lsi-Chr5:5469034 0 dispersed
Lsi05g00431 Lsi-Chr5:5469034 Lsi02g01554 Lsi-Chr2:21392597 6.93E-109 dispersed
Lsi05g00431 Lsi-Chr5:5469034 Lsi03g01412 Lsi-Chr3:25070978 3.92E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00431 K03549 - csv:101208973 697.967