Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00445 ATGGTGGCCGGTTCCAATTCAACGTCTTCTTCCTCTGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGACCCTCTCTTCTCCTTCTCCTCTCCCACGCATTCCTTTCCATCCCTACGGATCTCCGATCCCGATTCTCCTCTCCTCGATTCCTGCAACGTTTCAGGCCCGTCATCCCAACCTGCAAATGGTGCTGAATCTTACAAGAAGTTAAGTGAATCAAAGACTCTAAATGATTTGAAGATGCCAGCTCGGCAAAACACTGGTACCTATTTGCAGTGTCAATCTGGTGGACAAGAGGGTGGATCAGTCCTACCGGGGAGTAAAATATCATCATCTCTAATTTCTTCTCATGATCAGCAAAGTGTGAGGTCTGCAAACTCTCATGGCAATAATAAACGCTCAGCTGGAAGAAAAGCCCAAAGCACAAATGGCAACCATTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCAAGCCAGAGCTCCTCCTCCAAGAAGGCCACAGAAGATAAAGCCATATAACAAGGATCTCTTTCTCCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACAGATGAATATATGGATCCTGATAAAATGCTGCATTGGGAGGATATTGTATGTGTAAGGTATTCTACACCATCGCTGGTCCAGTGTCCTATTTGTCTGGAGCATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTACTTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCCAAGGATTTATACACCGTCCATATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGATTTTATGCTTTTAACTCGCCAAAAAAATTCATATGCCATATCATGCAAGGATAAACAAGAGGATGATATCAGGTCAAGTGACAGCGATCAAATCTATGATTCTTTTTCAAAATTTATATTTACATCTGATGTGGATCTCTCAGTGCGGAAAGCAATATCTGATCTAGATGCCTGGTTAGCCAAAGCAGAAGCAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGCATTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGACTTGTTTTAAGCATAACTGTCAGATAGGATCTCATGTGCTCCTGCCAACTGATAGTATTAGCAATGCTGGTTCTGGAGCATGTAGTTCCAGACATGAGGTTCCTTCCGTTGATATTTATGAAGATTGCAAGTTTCTGGGGAATACAGCGCAAGATAAGTTGGATTATTCTACTCCTGTGGGTCAGAATGGGGCTATGGATGAATCTTTAGAACTCCAACAAAACTCGAATGAAATTAGAGATTCAAAGGACAAGGACTCGTACAATTTCTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTATGGGAGTTACGATAGGCTGCCTCTCAGAATAAGTGGAAAGATTTTAGAATTCGAAACGGTGACTCAAACCGAGGCAACAAGGAGGCGTTACCGTTATTTAAGTCATTTTTCCTTGACAACAACATTTCAGCTCTGTGAAATTGATTTGACCAAACTATTGCCTTCGGTCTCTATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAACAGAGGAAACAACTTGCAAAAAAGGTATTTTGTGAACTTAGCCAAAGGGCTATTTCTGTCCCACCATTCATCCACTATGGGCTGACTTCACAAGACTATGCCTACCCTCTCAACTTCGTAATCCCCTGTATTTATGACCACACCATCTTAAAAACTACTAATTGGGAAGTCCCCAGTTCTTTTCTAGTTCAGTTGGACGTTTCCCCTTCAATTCCCATGTACGCAAGCCATTGCTTGTTTCCTTTTCAAGTCAGTGTTGTTGGACTTTGTGAAAAGATGCAAAGGGAGAAGATCAAAGAAGAAGCTACTTCATCGTGTTCTTTGTCAATGATGGCGAGTCCAGGAAGTTCATATCATCACAATACTCCAAATCTTTCTTTGGATGACTTTGAAGGTAATATTTACCCTGCTGTCACATTGCCTTTATTTGTCTGCTTGAATGTTAGCGATGGGGAAAGATTTAGCTATATTCAAACAATAGATTTAAAAAATGTTGTGAATGAAGGAAGGGGAAAAAGAATATACTCGGAATGGCTTCCAAGTAAGCTCACTGTCCTGCTCGTGCTGCATGGATCTTTTTGTTCAGACAATCCTTCCTCTTGGGAAGATGGTGGGGTTTTTTGGTTCTCTGAATTTCCTGGGTGGCTTGCCTCTGCTTTAAATGAGGACTGCCATGCCGTCGTGGTTTCTGGTGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTCGGAGGGAGGCAACTGTTCTCAAGCGTTACAAGACTTGGTTTCGCTGCCGCACATGATTCTCCATCCTTGAGAATTGAGGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTTATCTGGTGCCAGCACTGAAATACAGAATGCAACTCCGTCGTTTGCAAACGTAATATCGAGGGCGAAGTCTGGAGGAAGTATAGAATCTCCAAAGGCAAATGAAGCGGGAAAGAAGGGGAAGAAACCAAGTCGAGTTCTGTTATCCACGGCAGGTGGTCGGCGCTATTGA 2748 42.32 MVAGSNSTSSSSASSLNPNSHHGTDPLFSFSSPTHSFPSLRISDPDSPLLDSCNVSGPSSQPANGAESYKKLSESKTLNDLKMPARQNTGTYLQCQSGGQEGGSVLPGSKISSSLISSHDQQSVRSANSHGNNKRSAGRKAQSTNGNHLLNFQYDPISRPRPQARAPPPRRPQKIKPYNKDLFLQANYKFVVLDSGYHTDEYMDPDKMLHWEDIVCVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHIELLKQYSVGDTIDFMLLTRQKNSYAISCKDKQEDDIRSSDSDQIYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQTCFKHNCQIGSHVLLPTDSISNAGSGACSSRHEVPSVDIYEDCKFLGNTAQDKLDYSTPVGQNGAMDESLELQQNSNEIRDSKDKDSYNFYQATDGQHIILHPLNMKCLLQHYGSYDRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTTFQLCEIDLTKLLPSVSMIPFMDEIKKREKQRKQLAKKVFCELSQRAISVPPFIHYGLTSQDYAYPLNFVIPCIYDHTILKTTNWEVPSSFLVQLDVSPSIPMYASHCLFPFQVSVVGLCEKMQREKIKEEATSSCSLSMMASPGSSYHHNTPNLSLDDFEGNIYPAVTLPLFVCLNVSDGERFSYIQTIDLKNVVNEGRGKRIYSEWLPSKLTVLLVLHGSFCSDNPSSWEDGGVFWFSEFPGWLASALNEDCHAVVVSGGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDLSGASTEIQNATPSFANVISRAKSGGSIESPKANEAGKKGKKPSRVLLSTAGGRRY 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5713066 5719416 + Lsi05G004450.1 Lsi05g00445 662937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00445 915 CDD RING-HC_RNF10 227 274 - -
Lsi05g00445 915 PANTHER RING FINGER 10 FAMILY MEMBER 122 911 IPR039739 -
Lsi05g00445 915 MobiDBLite consensus disorder prediction 1 176 - -
Lsi05g00445 915 Pfam Zinc finger, C3HC4 type (RING finger) 227 273 IPR018957 GO:0046872
Lsi05g00445 915 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
Lsi05g00445 915 SUPERFAMILY RING/U-box 222 286 - -
Lsi05g00445 915 SMART ring_2 227 273 IPR001841 -
Lsi05g00445 915 MobiDBLite consensus disorder prediction 882 915 - -
Lsi05g00445 915 MobiDBLite consensus disorder prediction 49 72 - -
Lsi05g00445 915 MobiDBLite consensus disorder prediction 1 41 - -
Lsi05g00445 915 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 330 IPR013083 -
Lsi05g00445 915 ProSitePatterns Zinc finger RING-type signature. 242 251 IPR017907 -
Lsi05g00445 915 MobiDBLite consensus disorder prediction 80 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00445 Lsi-Chr5:5713066 Lsi01g01051 Lsi-Chr1:8701448 4.17E-06 dispersed
Lsi05g00445 Lsi-Chr5:5713066 Lsi04g01328 Lsi-Chr4:21066138 3.97E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00445 - - csv:101203987 1034.25