Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00449 ATGCTTCCTAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGCCACTTCTTGGACCAGAACCAACCACGACAACGACAACGACGACGCCATCGCCATTGCTGCCGGTTCCATTTCATCCTTCAAATCTATGCTCCATTCCGACTGGTATATCAACTCTACTACTCCTCTCAATCCTTCTCACCAAGATTTTCATTCCCTTTCTACTCATCCCGACATTCGAGACCTTCCTTTCTCTTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCATCTTGCCTTCTCACAAATCTTCCTGCTTCTCTTCTCTTCTTAACGTCGTTTGCGGCAGTAATTTTGATAATGCCTTCGATTTAGGTGCTGACACTGCTCTGCTTGGATCTTTCCAAGGCAACCAAGCTTCGAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCGTCTCTTCCTCAAATCGGTAATCAGGAACTCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTAGTCGATAACCCTCCTGCATTCGGCGCTGGATTTAATCCGGCGGCTGCTTTTGAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGCGCGCAGCCGACGCTGTTTCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAATTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGGTCAATGTGGACGCCGAATTTGGAGAGGCTGAGAAAGATGAACGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGAGTCCGACGAACCCAATGAGTATAATAAGCAAGAGGATAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACTATCACTGGCGGAGACCAGAAGGGGAAGAAGAAAGGGCTGCCGGCGAAAAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAGTCGACTCCTCCTGGTTCTTTGTTGCAGCCTTCTGCGAGCTTTCACCCTTTGACGCCGACACTGCCGACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTCGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGATGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATATAA 1620 49.14 MLPKSTGILWLDGDHDDATSWTRTNHDNDNDDAIAIAAGSISSFKSMLHSDWYINSTTPLNPSHQDFHSLSTHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSILPSHKSSCFSSLLNVVCGSNFDNAFDLGADTALLGSFQGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVVDNPPAFGAGFNPAAAFESFDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLENLEVSGFKLGEGSMWTPNLERLRKMNGDEDIEDGSVDVSRLNYESDEPNEYNKQEDNVNAKNCGSNSNANSTITGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5739400 5742951 - Lsi05G004490.1 Lsi05g00449 662941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00449 539 Coils Coil 391 411 - -
Lsi05g00449 539 PANTHER BHLH TRANSCRIPTIONAL FACTOR 104 538 - -
Lsi05g00449 539 MobiDBLite consensus disorder prediction 319 341 - -
Lsi05g00449 539 SMART finulus 354 403 IPR011598 GO:0046983
Lsi05g00449 539 MobiDBLite consensus disorder prediction 311 348 - -
Lsi05g00449 539 ProSiteProfiles ACT domain profile. 467 539 IPR002912 -
Lsi05g00449 539 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 104 538 - -
Lsi05g00449 539 Pfam Helix-loop-helix DNA-binding domain 355 397 IPR011598 GO:0046983
Lsi05g00449 539 CDD ACT_UUR-ACR-like 468 528 - -
Lsi05g00449 539 Gene3D - 342 411 IPR036638 GO:0046983
Lsi05g00449 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Lsi05g00449 539 CDD bHLH_AtAMS_like 351 415 - -
Lsi05g00449 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 416 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00831 Lsi-Chr1:6593034 Lsi05g00449 Lsi-Chr5:5739400 2.30E-39 dispersed
Lsi02g00527 Lsi-Chr2:4582571 Lsi05g00449 Lsi-Chr5:5739400 3.21E-162 dispersed
Lsi03g00280 Lsi-Chr3:3418724 Lsi05g00449 Lsi-Chr5:5739400 5.40E-08 dispersed
Lsi04g02300 Lsi-Chr4:30168884 Lsi05g00449 Lsi-Chr5:5739400 2.04E-28 dispersed
Lsi05g00449 Lsi-Chr5:5739400 Lsi11g01209 Lsi-Chr11:20620419 3.73E-23 dispersed
Lsi05g00449 Lsi-Chr5:5739400 Lsi08g01047 Lsi-Chr8:19041201 6.86E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25308 PF00010 HLH 2.20E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00449 - - bhj:120082707 954.896