Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00457 ATGTGTGTTAGAGTGAATAGCTATGTTGAGAATTTGACACCGAGCGGTGTGTTGCAGAAGCTTGATCTTATTGTTTCACGAGTCGTTTTAAAGTTTTACATTCGATCTGTTTTAAGGTTGAGATATTTGTTTTTGGGCGACGATATTGACCCGATGAAATACAAGAGCATTTCATCTGGATTTGGAATTCTGCTAAAGGAGCAAGGAATCAGGGGCCTGTTTAGGGGTTGGGCGCCAACTCTACTAGGTTACAGTGCTCAGGGTGCTTGCAAGTATGGCATCTACGAATTCTTTAAGAAATACTATTCCGATATAGTCGGTCCTGAGTATGCAGCAAAGTACAAAACATTGATCTATCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATGTTGCACTTTGCCCCTTTGAAGCTGTTAAAGTTAGAGTTCAGACACAGCCAGGTTTTGCCAGAGATACAATGATGAAGTTCGCAACATTTGAGAACCTGGTGGAACTCATCTACAAGCATGTCATCCCCAAGCCTAAGAACGAATGCAGCAGTGCCTTGCAGCTCGGCGTCAGTTTTGCTGGTGGATATATTGCCGGTGTTTCTTGTGCTATAGCAGTTCAGAAGCTTGGATTATGGGGTCTCTTCACACGAGGGCTGCCTCTACGCATAGTCATGATTGGAACCCTCACTGGAGCTCAATGGACCAACTACCGGGGGGGTTGCCCCTTCCGTTGCTGCATCCCCGGAACATACAACTGCGAGTGCATAGGCTGTCCAATCATTGGCACTGCTTAA 789 45.63 MCVRVNSYVENLTPSGVLQKLDLIVSRVVLKFYIRSVLRLRYLFLGDDIDPMKYKSISSGFGILLKEQGIRGLFRGWAPTLLGYSAQGACKYGIYEFFKKYYSDIVGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARDTMMKFATFENLVELIYKHVIPKPKNECSSALQLGVSFAGGYIAGVSCAIAVQKLGLWGLFTRGLPLRIVMIGTLTGAQWTNYRGGCPFRCCIPGTYNCECIGCPIIGTA 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5824029 5828201 + Lsi05G004570.1 Lsi05g00457 662949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00457 262 Gene3D Mitochondrial carrier domain 46 239 IPR023395 -
Lsi05g00457 262 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 101 IPR018108 -
Lsi05g00457 262 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 154 202 IPR044677 GO:0005315|GO:1990547
Lsi05g00457 262 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 203 235 IPR044677 GO:0005315|GO:1990547
Lsi05g00457 262 SUPERFAMILY Mitochondrial carrier 51 235 IPR023395 -
Lsi05g00457 262 Pfam Mitochondrial carrier protein 53 103 IPR018108 -
Lsi05g00457 262 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 203 235 - -
Lsi05g00457 262 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 48 152 IPR044677 GO:0005315|GO:1990547
Lsi05g00457 262 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 48 152 - -
Lsi05g00457 262 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 154 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00457 Lsi-Chr5:5824029 Lsi09g00822 Lsi-Chr9:9426207 4.53E-106 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00457 K15102 - csv:101203018 333.569