Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00484 ATGAGTAAGAATCGGTTGCGTTCAGTTCCGCTCGACGCTCGTGGAGGTTCCATTACATCGACGATGGGAAGGCGATCCGTATGGGTTGCACTTCTCGTCTTTTCTTTTCTTCTTTCTTTGCGACTACACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGTTAAATTTTTGGGCTTTGGAGTTGATGTTCAGTACTCCGAAGCAGGATTGGAACAATGCTCATGAGATACATTGCTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATACCCTTTGTGGAAAAAAAGAAATTCGAGATTTCTACTAAGTGTAGGCTTCACCCTGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGCGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATAGATACAGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCGAGAAATAAACATATGGTCTTGCTGACAGCTGTTTTCCCGTCGATGAGGGTGCTTTGGCCAGCCATCTTCACGGTAGCTTCAGGATTTCTCCACTCTCCTCATTTAACAACTTTAACTACTTCCATCATTTATCTAATGAAACACTTTTGGTGTAATTCAAATGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGCTAGGACGAGTGCGTTCTACATTGTGATTTCAGTTTTGACAGTCCTTTTCGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGTATCTTTCCTTCGCCTACCTTCATTTGTATGATCATAAGATCTTGAACTTTGGTTTGACGGTCGGGTTCGTCTTACAGGGGAATGAGAACTCGACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCATAGATAGAACCTTTTTGCCCTTTCAATAA 1098 41.89 MSKNRLRSVPLDARGGSITSTMGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHCSRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARNKHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFCDAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKRYLSFAYLHLYDHKILNFGLTVGFVLQGNENSTTGAEASLTKWKKEKTFIDRTFLPFQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6156927 6160975 + Lsi05G004840.1 Lsi05g00484 662976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00484 365 ProSitePatterns Zinc finger C2H2 type domain signature. 138 159 IPR013087 -
Lsi05g00484 365 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 253 310 - -
Lsi05g00484 365 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 64 205 - -
Lsi05g00484 365 PANTHER ZINC FINGER PROTEIN-RELATED 253 310 - -
Lsi05g00484 365 PANTHER ZINC FINGER PROTEIN-RELATED 64 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00484 Lsi-Chr5:6156927 Lsi06g01616 Lsi-Chr6:26481657 2.09E-66 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00484 - - csv:101219582 397.512