Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00489 ATGCCAAGCGTGGCTGTGAAGCTCTACAGCGTCTTCTTCAAGTTTCTCTTGAAGCATCGTTTGCAGAATCTGATCCAAGCTCCACTTGACGAATCCAGCCCTTTTGGAGTCACATCTCGACCCGACGAAACGGTTGCTTCCGCTAATCCTTTGTTCACCGACGGCGTCGCTACCAAGGATATCCACATCGATCCGTTTACATCTCTGAGCATTCGGATCTTCCTCCCTGAATCTGCTCTAACTCCGCCTGAAGCCGACTCCAAACCCTCTTCCAAATCGTCCAAGGCTAAACCTAAACGGTCCAATCAAGATGCTCAACCCGATCTTGTTAATCAGAATCTGAATAATTTACAACAGTATCCTTCTCGTCGAAATAGCTATGGCCCTTCGGGAAATTCCAGGGAAGAACTACGGGTCAGTAGATTTGGGGGTTACAGTAATGAAATGGAGGGGTTGAATTTGATTCAAGGCTCTGCCCCCGGTGGCGTTTACAGAGGCTATGCGCCAGTGACGGAGAATAGTCGGAGGTTGCCGGTGATGTTGCAATTTCATGGCGGGGGGTGGGTTAGTGGGAGCAATGATTCGGCGGCCAATGATTTCTTTTGCCGGAGGATTGCAAAATTGTGCGATGTTATTGTCGTTGCTGTCGGGTATCGGCTTGCGCCGGAGAATCGATTTCCGGCTGCATTTGAGGATGGATTGAAGGTGTTGAATTGGTTGGGGAAGCAGGCCAATTTGGCCGAGTGCAGCAAGTCCATGGGGAATACCAAAGGCAATGGCAATGAATTTAAGAAATCGGATAATCATAGGCATATTGTTGACACATTTGGGGCGTCAATGGTAGAGCCTTGGTTGGCAGCCCATGGAGACCCAACAAGATGTGTTCTTCTTGGGGTTAGCTGTGGAGCAAATGTTGCAGATTATGTGGCTCGAAAGGCTGTGGAGGCCGGTAAGCTATTAGACCCTGTCAAGGTAGTCGCCCAGGTTCTCCTGTACCCATTTTTCGTTGGGAGTGTCCCAACTCATTCAGAGTTGAAGCTGGCGAATTCGTATTTTTACGACAAAGCTATGTGCCTTCTTGCTTGGAAACTATTCCTACCCGAGGAAGAGTTTAGTCTTGATCATCCAGCTGCAAACCCCCTTGTTTCTGGTAGAGAAGGCCCACCTCTAAAGCTCATGCCACCAACGCTGACAGTTGTGGCTGAACTCGACTGGATGAGAGACAGAGCCATAGCTTACTCTGAAGAACTTCGAAAGGTAAATGTCGATGCACCTGTTCTTGACTACAAGGATGCAGTGCATGAATTTGCGACTCTCGACATTCTTCTCAAGACACCTCAAGCCCAAGCTTGTGCTGAGGACATTGCCATCTGGGTCAAAAAATATATTTCACTACGAGGGCACGAGTTCTCTTATTGA 1419 48.48 MPSVAVKLYSVFFKFLLKHRLQNLIQAPLDESSPFGVTSRPDETVASANPLFTDGVATKDIHIDPFTSLSIRIFLPESALTPPEADSKPSSKSSKAKPKRSNQDAQPDLVNQNLNNLQQYPSRRNSYGPSGNSREELRVSRFGGYSNEMEGLNLIQGSAPGGVYRGYAPVTENSRRLPVMLQFHGGGWVSGSNDSAANDFFCRRIAKLCDVIVVAVGYRLAPENRFPAAFEDGLKVLNWLGKQANLAECSKSMGNTKGNGNEFKKSDNHRHIVDTFGASMVEPWLAAHGDPTRCVLLGVSCGANVADYVARKAVEAGKLLDPVKVVAQVLLYPFFVGSVPTHSELKLANSYFYDKAMCLLAWKLFLPEEEFSLDHPAANPLVSGREGPPLKLMPPTLTVVAELDWMRDRAIAYSEELRKVNVDAPVLDYKDAVHEFATLDILLKTPQAQACAEDIAIWVKKYISLRGHEFSY 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6185254 6189037 - Lsi05G004890.1 Lsi05g00489 662981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00489 472 PANTHER CARBOXYLESTERASE 16-RELATED 20 452 - -
Lsi05g00489 472 Pfam alpha/beta hydrolase fold 180 437 IPR013094 GO:0016787
Lsi05g00489 472 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 180 196 IPR002168 GO:0016787
Lsi05g00489 472 Gene3D alpha/beta hydrolase 35 467 IPR029058 -
Lsi05g00489 472 MobiDBLite consensus disorder prediction 80 135 - -
Lsi05g00489 472 SUPERFAMILY alpha/beta-Hydrolases 164 463 IPR029058 -
Lsi05g00489 472 MobiDBLite consensus disorder prediction 104 133 - -
Lsi05g00489 472 PANTHER ARYLACETAMIDE DEACETYLASE 20 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00489 Lsi-Chr5:6185254 Lsi03g00471 Lsi-Chr3:5337750 3.55E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00489 - - csv:101219102 894.419