Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00493 ATGGGTGAAGAAGATACAACAAAAATTACCATTGAGAATACAGAAAATGAAGCCAGAGAAGAAGATTTAAAAACAAATACAGTTGAGACTGTGGAAAATGGAAACAATAAAGAAGATAAAATGAAAATTACTGTTGAGACCGTGGAAAATGGAACCACTGAAGATGATAAAATGACAAATACCATTGAAACTGTGACGAATGGAACCAGTGAACTGGAAAAAACCAACGAGACTGTGCCTAAGGGGGAGGAAAATGGAGTGAAAGAACCAGAAATCAAGCAGGGTGCTGATGTTGAGGCAGAGGTCATGAAAATGGAAGAACCTAAGATCAAGGAAGATGAGGAGGTTAATGAAGAAAATGTGAAGGATTTAAAGGAGGAAGCTAATATTCAGGCAATGGAGGAAGATGTGAATCCAAGTGATAAGAACGATGAAGAAAATGTGGATATCAAAGATGAAGACAATATAGATGCCAAAGATGAAGAGAATGAGGATGCCAAAGATGTAGAAATTGAGGATGGCAAAGATGAAGAAATTGAGGATGCCAAAAATGAAGAAATTGAGGATGCCAAGGATGAAGAAATTGAGGATGCCAATGATGAGGAAATTGAGGATGCCAAAGATGAAACTGGGGATGCCAAAGATGAAACTGAGGATGCCAAAGATGAGGTAGAGAAGGTTGACAGCCATATGGAAGAGGAGGACAAGGAATTGAAGGATAAAGATCCCAACGAAGAAAAAACAAAGAAAGGAAGAAAGAGAAAGGGTGCCCTTAAATCAAAAGGAAACAATGAAGAGGATGAAAAGGAGGAGGCGGAGATAAGGACTCCCATTATTGATCGCCCTGTACGTGAGCGTAAATCAGTTGAAAGGTTGGTGGCATCTATAGAAAGATATGCTGTGAAGGAATTCCATATTGAAAAGGGCCGTGGTGCTCCACTTAAAGATATACCCAATGTGGCATTCAAATTATCAAGGAAGAAGACTGATGACATCTTCAGGCTGCTTCATACAATTCTATTTGGAAGGAGAGGAAAGGCATTTCAGATTAAGAGCAACATATCCAGGTTTTCAGGTTTTGTGTGGCATGGAGATGAGGAAAAACAGAAGAATAAAGTCAAAGAAAAATTTGACAAGTGTAATAAAGAGAAATTATTGGAATTGTGTGATGTGCTAGACATTCCTGTTGTGAAGGCCACCACAAGGAAGGAAGATATTATTGGCAAGCTCATAGAATTTTTAATAGCTCCTCACGCTACAACTACTGTTCTCCTTGCAGAAAAAGAAAAGTCGAGCAAGGGTAAAAAGCGTAAACGGGCAGTAAAAGGAGGAACATCAACTCCTGGAGACAGTAGTTCAAAAAATTCAGCAAAGAGTCGTCGAAAAAGAGGGAATAGTGCAAGATCTGAGAAGACAAAAAATTCAAGTGATGAAGATGATGAGTCAGAAGAAGAGAAGGAAGCAGAAGAAGAAAATGACAAGGAGAATGAGAATGGAACCACAGAAAAATCTGATGATGAAGTGTTCGAGCAGCCAGAAAGTGAAGATATCAATGACCCAACTGATGAATCTGAGGAAGAAAAACCCAGAGCGAGTTCAAAAAGTTCATCAAAAAAGAGGGGATCTATAGGAAAATCAAGAAGTAAGAAAGTTACAGGTTCCAATAAATCTGATTCAGCAAAATCTACAACAAAAAAGTCATCAGCAAGTCGTGCTAAGGTTGATGACAATGATGCTAGTCCAAAGGTATTCTCTAGGAAGAAGAATAGCGAGAAAGAGAGCAAGGCCTCAACTCCACCAAAATCTGCTGCCAAGGAGAAGCCTGGAAAAAAGATTGTAAAAGGGAAGGAGAAGACCAAGGAGGACAAAACAAGGCCAAGTGATGATGAGCTCAGGGAAGCAATATGTGAAATTCTTAAAGTAGTCGACTTTACTACGGCCACCTTCACCGACATTCTGAAGCAGCTCGCTCGGCAATTCAAGATGGATCTCACCACACAAAAATCATCAATAAAACTTATGATCCAAGAAGAGCTCACGAAACTAGCAGACGAAGCAGAAGACGAAGAAGATGGCGGTGAAGGCGAAGGCAATGGCAATGGCGAGAAGGATGGTAAACAGGCAGCAGCAGGTCAAGAGGTGGAAACGTGA 2151 40.12 MGEEDTTKITIENTENEAREEDLKTNTVETVENGNNKEDKMKITVETVENGTTEDDKMTNTIETVTNGTSELEKTNETVPKGEENGVKEPEIKQGADVEAEVMKMEEPKIKEDEEVNEENVKDLKEEANIQAMEEDVNPSDKNDEENVDIKDEDNIDAKDEENEDAKDVEIEDGKDEEIEDAKNEEIEDAKDEEIEDANDEEIEDAKDETGDAKDETEDAKDEVEKVDSHMEEEDKELKDKDPNEEKTKKGRKRKGALKSKGNNEEDEKEEAEIRTPIIDRPVRERKSVERLVASIERYAVKEFHIEKGRGAPLKDIPNVAFKLSRKKTDDIFRLLHTILFGRRGKAFQIKSNISRFSGFVWHGDEEKQKNKVKEKFDKCNKEKLLELCDVLDIPVVKATTRKEDIIGKLIEFLIAPHATTTVLLAEKEKSSKGKKRKRAVKGGTSTPGDSSSKNSAKSRRKRGNSARSEKTKNSSDEDDESEEEKEAEEENDKENENGTTEKSDDEVFEQPESEDINDPTDESEEEKPRASSKSSSKKRGSIGKSRSKKVTGSNKSDSAKSTTKKSSASRAKVDDNDASPKVFSRKKNSEKESKASTPPKSAAKEKPGKKIVKGKEKTKEDKTRPSDDELREAICEILKVVDFTTATFTDILKQLARQFKMDLTTQKSSIKLMIQEELTKLADEAEDEEDGGEGEGNGNGEKDGKQAAAGQEVET 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6229566 6238751 + Lsi05G004930.1 Lsi05g00493 662985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00493 716 MobiDBLite consensus disorder prediction 67 272 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 213 251 - -
Lsi05g00493 716 Gene3D - 616 681 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 477 495 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 258 272 - -
Lsi05g00493 716 PANTHER DEK PROTEIN 153 705 IPR044198 GO:0003677|GO:0006325
Lsi05g00493 716 Coils Coil 255 275 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 568 631 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 76 132 - -
Lsi05g00493 716 PANTHER DEK DOMAIN-CONTAINING CHROMATIN ASSOCIATED PROTEIN 153 705 - -
Lsi05g00493 716 Coils Coil 184 237 - -
Lsi05g00493 716 Coils Coil 111 131 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 139 212 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 547 567 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 682 716 - -
Lsi05g00493 716 Coils Coil 478 498 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 1 21 - -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 426 631 - -
Lsi05g00493 716 SUPERFAMILY DEK C-terminal domain 619 679 - -
Lsi05g00493 716 Pfam DEK C terminal domain 626 679 IPR014876 -
Lsi05g00493 716 MobiDBLite consensus disorder prediction 508 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00493 K17046 DEK; protein DEK - csv:101204393 756.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00493 Lsi-Chr5:6229566 Lsi06g01657 Lsi-Chr6:26833724 3.25E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00493 Lsi_Chr05 FPKM 0.081671 0.036459 0.087556 0.0 0.086172 0.107432 0.247635 0.067814 0.0 0.1211