Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00494 ATGGCGGACTCCGACAACGATTCCGGTGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTCCCGATCGCCAACGTTGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAACGAAAGACGATCAACGGCGATGATTTGCTCTGGGCTATGGCGACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCTCCGCCGTCAACTCCGCCGGAGTTGCGAATAGTACGTTCTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGATAG 537 56.42 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6245182 6245718 + Lsi05G004940.1 Lsi05g00494 662986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00494 178 MobiDBLite consensus disorder prediction 1 24 - -
Lsi05g00494 178 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lsi05g00494 178 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lsi05g00494 178 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Lsi05g00494 178 MobiDBLite consensus disorder prediction 159 178 - -
Lsi05g00494 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 151 - -
Lsi05g00494 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lsi05g00494 178 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lsi05g00494 178 Gene3D Histone, subunit A 11 136 IPR009072 GO:0046982
Lsi05g00494 178 SUPERFAMILY Histone-fold 22 127 IPR009072 GO:0046982
Lsi05g00494 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02373 Lsi-Chr2:30411328 Lsi05g00494 Lsi-Chr5:6245182 4.22E-52 dispersed
Lsi05g00494 Lsi-Chr5:6245182 Lsi07g00191 Lsi-Chr7:2084961 2.75E-57 dispersed
Lsi05g00494 Lsi-Chr5:6245182 Lsi10g00042 Lsi-Chr10:648177 1.42E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25311 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00494 K08065 - csv:101204640 298.516