Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00509 ATGACCTCAAAAAATCTCCTTGTTTTCGCTCTTTTCCTCTTTCTCTTCACTCCCCCAAGAACAGAGTGTATTGGCTTCGATTTCACTTCTTTCAACATCAGAAACCTTACTCTCCTCGGCGATTCCCACCTCCGCGACGGCGTTATCGGCCTCACCAAAGAGCTCGGAGTCCCTTCCTCAAGCGCCGGCGCCGTAATTTACAACAAACCAATCGGATTCTACGACGCCGATGCTAACATCACTGCCTCTTTCTCTACAAGATTCTCTTTCTCCATCACCAACATTAACCCCACTTCCTCCGGCGACGGCCTTTCCTTTTTCCTCTCCCCCGATAATCAGACCCTTGGCAGCCCCGGTGGGTATCTGGGTCTCGTTAATTCATCCCAATTGACCAAGAACAAGTTTCTGGCGGTTGAATTTGATACACGGCTTGATTCTGTCTTCAATGATCCTAATGCCCACCATGTTGGATTCGACATTGAGAGCTTGATTTCGATCAAGACGGCTAACCCTGCTTCTCAAGGTGTAAATCTCAAGAGTGGGAAGTCGATTACGGCTTGGATTGAGTACAAGAATGAAGAATGTAGGTTGAGGGTTTTCTTGAGTAATTCTGGTTTGAAGCCTTCCAAGGCGCTTCTCGAGGTCGGTGTCGATCTTTCGAGCTATCTTAAGGAGGTTATGTATGTCGGGTTTTCGGGTTCGACTGAAGGGAGTACTGAGCTTCATTTGATTGAGAGTTGGAGTTTTAATACTTCTGGGTTTGTTCCTGCTAGGCCTAGATTTAATCCTCATAATGTTTCTGATAGCTCTGTGATTGTTTCTCCTAATATTTCTATATCTGATTCTGGTAATGCTCATCACAGTAGGCTCGGGTTGGGTCTCGGGATCGCCGGACCGGCTTTCTTTTGTGCTGTGATTGCTGTGTTTGGTTTCTTTTCACTTAGGAAATGGAGGAAGATTAGGACTAAGAAAAGCATCAAGGCAGAGCTTTTGACAGGTCCTAGAGAGTTTAGTTACAGAGAACTAAAGACAGCCACAAAAGGATTTCATTCCAGTAGGATCATTGGCAATGGGGCTTTTGGAACTGTCTATAAAGCTTTTTCCGTCTCATCAGGAACCATTTCTGCGGTTAAAAGATCGAAACATTCCCACGAAGGGAAGACCGAGTTCCTGGCCGAGTTGTCGATTATAGCTCGGTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGTGTCGAGAATGATGAATTGCTTCTCGTTTATGACTTTATGCCAAACGGGAGCCTTGATAGGCTGCTTTACCAGGAATCTGGAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAACATTGCTGTTGGATTGGCATCTGTGCTGACATACCTACATCAGGAATGTGAGCAGCAAGTCATCCACAGAGATATAAAAACTGGTAATGTACTACTGGATGGGAACTTCAATGCGAGATTGGGCGATTTTGGATTGGCAAAGCTCATGGATCATGACAAGAGCCCGGTTTCGACTCTAACTGCAGGAACAATGGGATACCTTGCACCTGAGTATCTTCAATATGGGAAAGCGACTGAGAAAACCGACGTTTTCAGCTACGGAGTGGTTATCCTTGAAGTGGCTTGTGGGAGGAGGCCGATTGAGAGAGAACCAGGTACTCAAAAGATGGTTAATCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATTGATGCAGCTGATAAAAGGTTGAATGGGGAGTTCAGGGAAGAAGAAATGAGGAAGCTCTTACTTGTCGGATTGAGCTGTGCAAACCCGGATAGCTCGCCAAGACCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGGCAGAGCCAGTGTTCGTGCCAAAAATGAAGCCTAGTCTTACATTTTCTTGTGGCTTTTCACTGACTGTGGATGATATTATAATAGAGGAAGAAGGTGGAGGAGAGTGGGAATCTTCAAAGGCAACCATTGTCCAAATAGACTGA 2016 45.54 MTSKNLLVFALFLFLFTPPRTECIGFDFTSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGAVIYNKPIGFYDADANITASFSTRFSFSITNINPTSSGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFLAVEFDTRLDSVFNDPNAHHVGFDIESLISIKTANPASQGVNLKSGKSITAWIEYKNEECRLRVFLSNSGLKPSKALLEVGVDLSSYLKEVMYVGFSGSTEGSTELHLIESWSFNTSGFVPARPRFNPHNVSDSSVIVSPNISISDSGNAHHSRLGLGLGIAGPAFFCAVIAVFGFFSLRKWRKIRTKKSIKAELLTGPREFSYRELKTATKGFHSSRIIGNGAFGTVYKAFSVSSGTISAVKRSKHSHEGKTEFLAELSIIARLRHKNLVQLQGWCVENDELLLVYDFMPNGSLDRLLYQESGEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREPGTQKMVNLVDWVWGLHSQGKIIDAADKRLNGEFREEEMRKLLLVGLSCANPDSSPRPSMRKVLQILNNEAEPVFVPKMKPSLTFSCGFSLTVDDIIIEEEGGGEWESSKATIVQID 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6389572 6391587 - Lsi05G005090.1 Lsi05g00509 663001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00509 671 Pfam Legume lectin domain 25 256 IPR001220 GO:0030246
Lsi05g00509 671 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Lsi05g00509 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 257 IPR013320 -
Lsi05g00509 671 PANTHER - 21 641 - -
Lsi05g00509 671 Gene3D Transferase(Phosphotransferase) domain 1 425 640 - -
Lsi05g00509 671 SUPERFAMILY Protein kinase-like (PK-like) 332 642 IPR011009 -
Lsi05g00509 671 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Lsi05g00509 671 ProSiteProfiles Protein kinase domain profile. 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00509 671 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 641 - -
Lsi05g00509 671 Gene3D - 22 258 - -
Lsi05g00509 671 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246
Lsi05g00509 671 CDD STKc_IRAK 355 623 - -
Lsi05g00509 671 Pfam Protein kinase domain 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00509 671 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Lsi05g00509 671 SMART serkin_6 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00509 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02039 Lsi-Chr3:31752901 Lsi05g00509 Lsi-Chr5:6389572 0 dispersed
Lsi05g00509 Lsi-Chr5:6389572 Lsi08g00532 Lsi-Chr8:13287602 3.51E-153 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83630 PF00069 Pkinase 2.60E-51 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00509 - - csv:101209797 1229.54