Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00511 ATGTTGCTGATCCCAAACAAGCCAACCTCCGGCAACAACACACCGAACAGCAATCACCACCTCTCTAACGGTGGAGCCGCCACCGGCAACTCCCCAGCTACCAGCCCAGTCCCGATCACTGCCGCTGCCAACAATGAACAAAACCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGTATCATGCGACGGATCTTACCCTCCCATGCAAAGATATCTGACGATGCCAAAGAGACCATCCAAGAATGTGTATCGGAGTATATCAGCTTCATCACTGGCGAAGCGAACGAGCGATGCCAACGAGAGCAGCGCAAGACGGTGACGGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGATGACTACATCGAACCGCTAACTGTTTTTCTCAACCGTTATCGTGAATTGGAGAGTGACCGAATTCGCACTGAGCCAATCTTGAGGCGCAATGTAGATTACGGGCCACAAGTGGGGATGATGCCACCGTATGGGCAGGCGTTTCAGATAGGACACGTCCCGGCAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTGGGAGCGGCGGGCCGAGCGCGGGGAACGGTAGCCAGCTTTGA 630 53.97 MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAANNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6412401 6413030 + Lsi05G005110.1 Lsi05g00511 663003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00511 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Lsi05g00511 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lsi05g00511 209 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lsi05g00511 209 SUPERFAMILY Histone-fold 56 149 IPR009072 GO:0046982
Lsi05g00511 209 Gene3D Histone, subunit A 46 160 IPR009072 GO:0046982
Lsi05g00511 209 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Lsi05g00511 209 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Lsi05g00511 209 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Lsi05g00511 209 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 27 175 - -
Lsi05g00511 209 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00511 Lsi-Chr5:6412401 Lsi07g00191 Lsi-Chr7:2084961 1.70E-44 dispersed
Lsi10g00042 Lsi-Chr10:648177 Lsi05g00511 Lsi-Chr5:6412401 1.08E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25312 PF00808 CBFD_NFYB_HMF 2.40E-25 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00511 K08065 - csv:116402762 376.711