Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00513 ATGGAAATTAGGAGAGAGGATGAAATTGAAGACATTTCATTATCTCCTTCAACTATGCAAATTACAGGCACCAATGCCTTAGGCCATAACATTGTTGATTTCATCTCCCAACCTTCCATCAAAAATAACCACTCTGAGGTTAACATTCAAATTCAGACTTGTCATACCAATAGAACTTCCCCACTTCCAATTTTTCTCAAGTTTGAGGATGTAGAATACAAAGTGAGGAATAAGCAAGGGTCCACCAAGAACAACCCATTGAAGGCAGTGATGTCAAAGGTTGGCTCACAAATCAACATGGACCAACAAGACAGCTACAAGAAGATTTTAAAGGGCATAACAGGAAGGGTTGGGCCAGGGGAAATACTTGCTTTAATGGGTGCTTCAGGCAGTGGCAAAACAACATTATTGAAAGTGATTGGAGGAAGAGTACTTGACAATGTCAAAGGCAATATTACTTACAATGACATTCCATATACTGCTGCTCTTAAAAGAAGAATTGGTTTTGTGACTCAAGACGACGTGTTGTTCCCACAATTAACGGTTGAAGAGACTTTACTTGTCTCGGCATTTCTTCGGCTACCGAACAATATGAACCGACAGCAAAAGTATGAGAGAGTTGACATGATAGTGAAGGAATTAGGACTTGAAAGATGTCGGAACACGAAGATCGGAGGTGGCTTTGGTAAAGGAATATCAGGAGGAGAAAGAAAAAGAACAAGCATAGGCTATGAAGTTCTGATTGATCCTTCACTTTTATTACTTGACGAACCAACTTCAGGCCTTGATTCGAACTCGGCAAATAGGCTTCTTCTTGTTCTCAAAGGACTCGCCAAGGCAGGACGGACAATAATCACAACCATACACCAGCCATCAAGCAGAATGTTCCACATGTTTGACAAGCTTTTGCTGATAGCAGAAGGCTATCCTATATACTACGGAAAAGCTAAAGAATCAATGGAATACTTCTCATCTTTGAGATTTACCCCACAAATTCCCATGAACCCTGCAGAGTTCTTGCTTGATCTAGCAACAGGACAAGTAAGCGACATTAGTCTTCCAGAAGATCTAACGACATCTCGAGGCTCTCTTGACACAGACAAATCAATTATCGAGTATCTGCAACTCAAGTACAAAACTCAATTGGAGGTTCAAGAAAGAACAAAAAATCAAGCTGCAAAGGCACCAGAACATCTACAACTAGCTGTGCAAGTCGGGAAGGATTGGACAATAAGCTGGTGGGAGCAATTTAGGATTGTTTCAAAGAGAACATTCAAAGAAAGGAGTAAGGATTACTTTGACAAGCTAAGGCTACTTCAAGCAGTTGGAGTGGCATTGTTGTTGGGACTTCTTTGGTGGAAATCCAAGATCGACACCGAACCTCAGCTACGAGACCAGATCGGCTTATTGTTCTACATTTGCATATTTTGGACATCTTCATCGATCTTTGGAGCGGTATACGTCTTTCCATTTGAAAAGCTCTATTTGGTGAAAGAACAAAAGGCGGACATGTATCGACTAAGCGTGTACTACATGAGCAGTACGCTGTGCGACATGGTTGCACATGTGCTCTATCCAACATTGTTCATGCTCATTCTCTACTTTATGGTTGATTTCAAGAGAACAGTTTCCTGTTTCTTGCTAACATTGTTTGCAATATTATTGGTAGCAGTGACAAGCCAGGGGGCCGGAGAATTGTTTGGAGCTGCAGTTCTAAGTATTAGAAGGGCTGGGATGGTTGCATCTCTGATACTCATGTTATTTCTTTTAACAGGAGGCTACTATGTACAGCATATACCGAAGTTCATGCGGTGGATGAAATATATATCATTCATGTATTATGGGTTCAGACTACTTCTAAAAGTGCAATACTCAGGAGATCAGTTATATGAGTGTCAAAGCTTACAAGGCTGCAAGACACTGCAGTCTTCTTCTTCCTTCGACACTGTCAACCTCAACGGCGGCTTGCAAGAGGTCTGGATTCTCCTAGCCATGGTCCTCGCCTACAGAATATGTGCCTACTTCTGCTTGCACAAAAGGATCAGCCAATCTAATATTTGA 2061 41.39 MEIRREDEIEDISLSPSTMQITGTNALGHNIVDFISQPSIKNNHSEVNIQIQTCHTNRTSPLPIFLKFEDVEYKVRNKQGSTKNNPLKAVMSKVGSQINMDQQDSYKKILKGITGRVGPGEILALMGASGSGKTTLLKVIGGRVLDNVKGNITYNDIPYTAALKRRIGFVTQDDVLFPQLTVEETLLVSAFLRLPNNMNRQQKYERVDMIVKELGLERCRNTKIGGGFGKGISGGERKRTSIGYEVLIDPSLLLLDEPTSGLDSNSANRLLLVLKGLAKAGRTIITTIHQPSSRMFHMFDKLLLIAEGYPIYYGKAKESMEYFSSLRFTPQIPMNPAEFLLDLATGQVSDISLPEDLTTSRGSLDTDKSIIEYLQLKYKTQLEVQERTKNQAAKAPEHLQLAVQVGKDWTISWWEQFRIVSKRTFKERSKDYFDKLRLLQAVGVALLLGLLWWKSKIDTEPQLRDQIGLLFYICIFWTSSSIFGAVYVFPFEKLYLVKEQKADMYRLSVYYMSSTLCDMVAHVLYPTLFMLILYFMVDFKRTVSCFLLTLFAILLVAVTSQGAGELFGAAVLSIRRAGMVASLILMLFLLTGGYYVQHIPKFMRWMKYISFMYYGFRLLLKVQYSGDQLYECQSLQGCKTLQSSSSFDTVNLNGGLQEVWILLAMVLAYRICAYFCLHKRISQSNI 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6430307 6435658 + Lsi05G005130.1 Lsi05g00513 663005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00513 686 Pfam ABC transporter 110 260 IPR003439 GO:0005524
Lsi05g00513 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 332 IPR003439 GO:0005524
Lsi05g00513 686 Pfam ABC-2 type transporter 289 349 IPR043926 GO:0140359
Lsi05g00513 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 2 681 - -
Lsi05g00513 686 Gene3D - 96 327 IPR027417 -
Lsi05g00513 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 324 IPR027417 -
Lsi05g00513 686 SMART AAA_5 119 310 IPR003593 -
Lsi05g00513 686 Pfam ABC-2 type transporter 415 624 IPR013525 GO:0016020|GO:0140359
Lsi05g00513 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00513 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101203108 1234.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00513 Lsi-Chr5:6430307 Lsi05g00704 Lsi-Chr5:9436452 4.28E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g710 . . . . Bpe09g00114 . . Bma13g01127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00875 . Bda12g00978 . . . . . . . . . . . Cpe14g00776 . . . . . . . . . . . . . . . Lsi05g00513 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011919 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00513 Lsi_Chr05 FPKM 47.359188 58.027054 0.330062 0.207 0.0 0.0 0.0 0.0 0.0 0.0