Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00514 ATGTCCCATTATCACGGGGATGATACTGACTACATGGCTGATGAGTACGAAATGGAAGACATTGACGATGATATGGATGATGAGTATCATGATAGAGAAGTGGAAGGCTCAGATTCTGATGCTGATGAATTCAACTCGAGTAGTAGAATAGTTGATACCACTGCAGCTCAAGCAAGAAAAGGAATAGACATTCAAGGGATTCCTTGGGAGAGACTTAGCATTACTAGAGAAAAGTACAGGAAAACTAGACTTGAGCAGTACAAGAACTATGAAAATATCCCTAATTCAGGAGAAGGGTCAGAGAAGGATTGCAAGGCTACTGATAAAGCATGTTCATACTATGAATTTTGCCGAAATTCAAGATCTGTGAAATCCACCATTCTTCATTTTCAGTTGAGGAACTTAGTATGGGCGACATCAAAACATGATGCATACCTTTTATCACATTTTTCTGTAATTCATTGGTCATCATTATCGTGCACCAAGTCTGAAGTACTCAATGTTTCGGGACATGTGGCACCTACAGAGAAGCACCCTGGGAGCTTATTAGAGGGATTTACACAGACACAAGTCAGTACACTTGCAGTGAAAGATAAGCTACTTGTTGCTGGAGGATTTCAGGGAGAGCTTATTTGCAAGCATCTAGACCGCCCAGGCGTTAGTTTTTGTTCCAGAACAACTTACGATGATAATGCTATAACAAATGCTGTTGAGATATATACTAGCGCTAGTGGTGCAGTTCATTTCACTGCTTCTAATAATGATTCTGGAGTCAGAGATTTTGATATGGAGAAATTTCAGCTTTCTAAGCACTTCTGTTTTCCTTGGCCAGTTAATCATGCTGCCTTGAATCCAGATGGTAAACTTCTTGTGATTGTTGGTGACAATCCTGAAGGCTTATTGGTGGACTCACAAACTGGAAAGACAGTTGCATCTCTATGTGGACACTTGGATTTTTCATTTGCATCAGCATGGCATTCCGATGGCATTACCTTTGCCACTGGGAACCAGGACAAAACTTGTAGGATTTGGGATGTAAGAAATTTATCAAAGTCAGTTGCTGCTCTGAAAGGCAACCTCGGAGCCATTCGGTCCATCCGCTATTCCTCTGATGGTCGGTACATGGCAATGGCAGAACCAGCAGACTTTGTGCATGTGTTTGACGTGAAAAGCGGGTATGAGAAAGAACAAGAAATTGACTTCTTCGGAGAAATCTCCGGTGTGTCGTTTAGTCCAGACACAGAATCACTTTTCATTGGAGTATGGGATCGAACATATGGGATACTTCCGTTCTTATATTACGAATATGCTGAATCTGAAGTACCTTCTTCCATTTTCTTAGCATTTGAAGGGCCGAGGCGACGAGGAAAAAATTTAGAGATGACTACTGCAGCTCGACCCACATGGGCACCGGCTAAAGGTGGAAACGAGCAAGGTGGTACTCGAATTTTCGGCCCATCCCAGAAATATTCCTCCAGAGACATCGCTTCTCATACGACCTTGAAACCCAGAAAGGAAGGACAAGATACCCATGATGAATTGCAAAGGAGGAATCTCAGGGATGAGTTAGAAGATCGTGAAAGGAGGCATTTTTCATCAAAGAACAAGTCATATGATGATAGAGATCATAGAAAAGGAAGCCAACTTTTGTTAGAAGGTGGAAAGAGAGATATTGAAGATCGCATTGTACCACGAAGTTTAGATGCTGATGATTCTGATGTGGATGTCAAAAGTGACGATGAGAGTGACGACGACGACGATGAGGATGATACTGAAGCTCTTTTGGCTGAGCTGGAACAAATAAAGAAGGAAAGAGCAGAGGAAAAGCTTCGAAAGGAAAGACAAGAACGGGAGGAAGAACTTAAAGTCAAGGAAGCAGAGTTACTCCGAGGAAATCCACTGCTTAATGAGCAACCCTCCTCTTTTAGCGTCAAAAGAAGATGGGATGATGATGTTGTGTTCAAGAATCAGGCCCGTGGCGAATCAAAGACTCCTAAGCGTTTTATAAACGATACAATTAGGAACGACTTCCACCGAAAATTCTTGCAGAAGTACATGAAGTAA 2064 42.01 MSHYHGDDTDYMADEYEMEDIDDDMDDEYHDREVEGSDSDADEFNSSSRIVDTTAAQARKGIDIQGIPWERLSITREKYRKTRLEQYKNYENIPNSGEGSEKDCKATDKACSYYEFCRNSRSVKSTILHFQLRNLVWATSKHDAYLLSHFSVIHWSSLSCTKSEVLNVSGHVAPTEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYTSASGAVHFTASNNDSGVRDFDMEKFQLSKHFCFPWPVNHAALNPDGKLLVIVGDNPEGLLVDSQTGKTVASLCGHLDFSFASAWHSDGITFATGNQDKTCRIWDVRNLSKSVAALKGNLGAIRSIRYSSDGRYMAMAEPADFVHVFDVKSGYEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGILPFLYYEYAESEVPSSIFLAFEGPRRRGKNLEMTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKEGQDTHDELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIVPRSLDADDSDVDVKSDDESDDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAELLRGNPLLNEQPSSFSVKRRWDDDVVFKNQARGESKTPKRFINDTIRNDFHRKFLQKYMK 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6435213 6452901 - Lsi05G005140.1 Lsi05g00514 663006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00514 687 SMART WD40_4 306 345 IPR001680 GO:0005515
Lsi05g00514 687 SMART WD40_4 349 388 IPR001680 GO:0005515
Lsi05g00514 687 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 348 - -
Lsi05g00514 687 MobiDBLite consensus disorder prediction 573 590 - -
Lsi05g00514 687 Pfam Cwf15/Cwc15 cell cycle control protein 461 687 IPR006973 GO:0000398|GO:0005681
Lsi05g00514 687 Gene3D - 226 449 IPR015943 GO:0005515
Lsi05g00514 687 Coils Coil 591 627 - -
Lsi05g00514 687 MobiDBLite consensus disorder prediction 12 31 - -
Lsi05g00514 687 MobiDBLite consensus disorder prediction 481 497 - -
Lsi05g00514 687 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Lsi05g00514 687 SUPERFAMILY WD40 repeat-like 197 427 IPR036322 GO:0005515
Lsi05g00514 687 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Lsi05g00514 687 MobiDBLite consensus disorder prediction 1 46 - -
Lsi05g00514 687 MobiDBLite consensus disorder prediction 498 572 - -
Lsi05g00514 687 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 429 - -
Lsi05g00514 687 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 429 - -
Lsi05g00514 687 MobiDBLite consensus disorder prediction 460 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00514 - - - csv:101218407 810.061
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00514 Lsi-Chr5:6435213 Lsi07g00057 Lsi-Chr7:599100 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g712 . . . . Bpe09g00112 . Bma10g00599 Bma13g01129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00877 Bda05g00675 . . . . . . . . . . . . Cpe14g00775 . . . . . . . . . . . . . . . Lsi05g00514 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00514 Lsi_Chr05 FPKM 0.0 0.0 0.245412 0.0 5.087679 4.050182 4.486357 0.0 0.0 0.0