Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00518 ATGGAGGAATCAGCGCCAATTTTCAAGAATCTTCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTTCATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTCCGGTTCTGTTGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCACGGACATGGTAAGGTCAAGGATGTTGAGTTGAAAGGACACACTGATAGTGTAGATCAGCTATGCTGGGACCCTAAACATTCTGATCTTATAGCGACTGCATCTGGGGACAAGACTGTTCGACTATGGGATGCTCGTAATGGGAAATGCTCACAGCAAGCTGAGCTCAGTGGAGAAAATATCAACATCACCTACAAACCTGATGGGACGCACATAGCTGTTGGGAATAGGGATGATGAACTTACGATTCTGGATGTTAGGAAGTTTAAACCAATTCACAAGCGAAAGTTCAATTATGAGGTGAATGAAATTGCTTGGAACATGACTGGGGAGATGTTTTTCCTGACAACTGGAAACGGTACTGTTGAAGTACTAGCATACCCGTCGCTTCGACCAATTGAAACTCTTATGGCTCATACAGCTGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGGGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGTGTGCGAACATTTACAAAACTCGAATGGCCTGTCAGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGACTTGTTCATTGATATATCAAATGTTCAAACGGGACGAACGGTCCATCAGATTCCTTGTCGGGCTGCAATGAACAGTGTGGAGTGGAATCCAAAACATAATTTACTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTATCTGTGCATTGA 930 43.76 MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGKLSVH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6490469 6494210 + Lsi05G005180.1 Lsi05g00518 663010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00518 309 Gene3D - 7 177 IPR015943 GO:0005515
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Lsi05g00518 309 CDD WD40 12 296 - -
Lsi05g00518 309 Pfam WD domain, G-beta repeat 14 47 IPR001680 GO:0005515
Lsi05g00518 309 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515
Lsi05g00518 309 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Lsi05g00518 309 PANTHER THO COMPLEX SUBUNIT 3 THO3 7 308 IPR040132 GO:0006406
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Lsi05g00518 309 Gene3D - 178 308 IPR015943 GO:0005515
Lsi05g00518 309 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Lsi05g00518 309 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Lsi05g00518 309 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Lsi05g00518 309 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 50 - -
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Lsi05g00518 309 SUPERFAMILY WD40 repeat-like 9 296 IPR036322 GO:0005515
Lsi05g00518 309 SMART WD40_4 139 177 IPR001680 GO:0005515
Lsi05g00518 309 SMART WD40_4 222 261 IPR001680 GO:0005515
Lsi05g00518 309 SMART WD40_4 55 95 IPR001680 GO:0005515
Lsi05g00518 309 SMART WD40_4 9 48 IPR001680 GO:0005515
Lsi05g00518 309 SMART WD40_4 264 302 IPR001680 GO:0005515
Lsi05g00518 309 SMART WD40_4 180 219 IPR001680 GO:0005515
Lsi05g00518 309 Pfam Anaphase-promoting complex subunit 4 WD40 domain 234 283 IPR024977 -
Lsi05g00518 309 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00518 K12880 THOC3; THO complex subunit 3 - csv:101219355 632.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00518 Lsi-Chr5:6490469 Lsi04g00701 Lsi-Chr4:6421751 2.16E-08 dispersed
Lsi05g00518 Lsi-Chr5:6490469 Lsi02g02285 Lsi-Chr2:29422484 8.05E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g735 . . . . . . . Bma13g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00986 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00518 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011335 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00518 Lsi_Chr05 FPKM 10.105491 10.169763 11.926266 13.138039 1.185939 0.594824 0.641574 0.0 0.0 0.2392