Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00522 ATGGGTTACATCGGGCGTCCTAGTCTGCATTTTCTCGGAATCTTGAAACTAACACGGGAACCTTCAAGAAAGAAAGTTCCAAATCAATCACATAGGTTCTATGAACAGCCACAGCAAGAACCTGAGTCCTGTTACTGGCCTCCTATCAACCATGGAGGTGGCTTGTATTCTGACGATGTATTCGAACAAAATCACTTACCATCTGAGGCTTTCAAACAGTATTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGTTAGACCCGTATTATTCTCCCGACAATAACTGTGGCTCACCTATCAGTAGATCTTGCTTAACAGATGATGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGGCTTGACATCTATTCTGTCACTGAACCAGTTAATCCTGTATTACCTGTGCAAGAAGCGGGGTGGAAGGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCACGAGCAATAGAAGAAAAAGATATGTTGACTGGAGAATGGTTGGTTTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATCCAGCGTTTAGGGGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAACTGCTCTCATACATGCATGTTCTCTATGAAATTTGCCCTTATTTCAAATTTGGGTACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCATATAATTGATTTTCAGATAGCTCAGGGAAATCAGTGGATCACATTGATGCAAGCTCTCGCCAATCGACCTGGAGGGCCCCCAATGGTTACTATTACAGGCATAGATGATTCGACTTCAGCTTTTGCTCGAGGAGGGGGGCTCGAGATTGTAGGAAAAAGGTTGACGATTTTGGCGGAGTCATTAAAGGTACCCTTTGAGTTCCATGGAATTGCAGGCTCTGCTTCTGAAATTCAACGTGAAGATCTAAAAGTTCAACCAGGTGAAGCAATTGCTGTGAGTTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGCAGTCAGAATCACCGGGATCGAATTTTGCGACTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACGGTTGTCGAGCACGAGTCAAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAGTATTATACTGCTGTTTTCGAATCCATAGATGTGACCCTCCCGAGAGATCACAAGGAGCGGATCAACGTGGAGCAGCACTGTTTAGCTCGGGACATTGTAAATTTAGTAGCTTGTGAGGGAGCCGAAAGAGTCGAACGTCATGAACTTTTCGGAAAATGGAGATCACGGTTACTCATGGCTGGGTTTAAGCCACACCCTTTAAGCCCTTTTGTCAATGCTACCATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGTTCTATATCTTGGCTGGTTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1689 44.52 MGYIGRPSLHFLGILKLTREPSRKKVPNQSHRFYEQPQQEPESCYWPPINHGGGLYSDDVFEQNHLPSEAFKQYCNLESSSGTSSYPPQNSSSTASFTSNGSPSSHQECHSYPLDPYYSPDNNCGSPISRSCLTDDAADDLRHKIRELETAMLGPDADRLDIYSVTEPVNPVLPVQEAGWKDVAEIISRRDLKEMLCACARAIEEKDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSSIYKALRCKEPIGAELLSYMHVLYEICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPMVTITGIDDSTSAFARGGGLEIVGKRLTILAESLKVPFEFHGIAGSASEIQREDLKVQPGEAIAVSFALVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFFPRFLQTLKYYTAVFESIDVTLPRDHKERINVEQHCLARDIVNLVACEGAERVERHELFGKWRSRLLMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGVLYLGWLNQNLVTSSAWI 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6546210 6549403 + Lsi05G005220.1 Lsi05g00522 663014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00522 562 MobiDBLite consensus disorder prediction 79 109 - -
Lsi05g00522 562 ProSiteProfiles GRAS family profile. 183 562 IPR005202 -
Lsi05g00522 562 Pfam GRAS domain family 193 561 IPR005202 -
Lsi05g00522 562 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 34 561 IPR005202 -
Lsi05g00522 562 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 34 561 - -
Lsi05g00522 562 MobiDBLite consensus disorder prediction 79 112 - -
Lsi05g00522 562 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00488 Lsi-Chr1:4030838 Lsi05g00522 Lsi-Chr5:6546210 0 dispersed
Lsi02g02011 Lsi-Chr2:26071675 Lsi05g00522 Lsi-Chr5:6546210 1.42E-146 dispersed
Lsi04g01253 Lsi-Chr4:19527943 Lsi05g00522 Lsi-Chr5:6546210 5.48E-171 dispersed
Lsi05g00522 Lsi-Chr5:6546210 Lsi03g00413 Lsi-Chr3:4715972 1.21E-80 dispersed
Lsi10g00554 Lsi-Chr10:8093732 Lsi05g00522 Lsi-Chr5:6546210 2.11E-46 dispersed
Lsi01g00680 Lsi-Chr1:5478459 Lsi05g00522 Lsi-Chr5:6546210 6.71E-59 transposed
Lsi09g01841 Lsi-Chr9:27255560 Lsi05g00522 Lsi-Chr5:6546210 1.31E-46 transposed
Lsi10g00057 Lsi-Chr10:977937 Lsi05g00522 Lsi-Chr5:6546210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25314 PF03514 GRAS 6.70E-130 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00522 - - csv:101220072 1021.92