Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00523 ATGATCCACAATCATACTGTAATTCAGTTTCCCTTTTTTTTTTCCGAGAAGGTGCATCTACAATCATACTGTACAAATCAGTTTCCCTTTTTTATTTTCTCAAGAAGGCACGCGATTGGGATTAGTAGCCATCCTTATCTGTTGTGCCCTTCCAACTTGAAGAGACGTTTTTTTCTCAAGAAAGCCTTTCATGTTTATGGGATGCTACCATTGAGTTATTACAAATGCACAAATGTTGGATGCCCCGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAGGCCGTTATAACTACGTATGAGGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCGGAGGCCCGTCGACAATTGCACCATCGAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCACGGGTGGTGAGAATAGATCAAATGAATACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTTGAAGTAGTTCAAGAGAACTCGGCTCCGACCTATTTTGGTGTGATCAATCGAGGTATAAATCAACATGGATCGAGAGAGAGTTTGAGCGAAAGCCGCAATAGGGAGATTGCTCCACTAAATCATTCATCTCATCCATATCCGACGAGCATTGGGAGAATACTAACAGGGCCTTGA 705 42.7 MIHNHTVIQFPFFFSEKVHLQSYCTNQFPFFIFSRRHAIGISSHPYLLCPSNLKRRFFLKKAFHVYGMLPLSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVGGPSTIAPSRYRLEESDTISLDLGVGIGTGGENRSNEYRQALHSQLVENQTPNGNFNFEVVQENSAPTYFGVINRGINQHGSRESLSESRNREIAPLNHSSHPYPTSIGRILTGP 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6549831 6550794 - Lsi05G005230.1 Lsi05g00523 663015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00523 234 MobiDBLite consensus disorder prediction 106 128 - -
Lsi05g00523 234 MobiDBLite consensus disorder prediction 200 234 - -
Lsi05g00523 234 Pfam WRKY DNA -binding domain 70 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00523 234 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 209 IPR044810 GO:0003700
Lsi05g00523 234 ProSiteProfiles WRKY domain profile. 70 110 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00523 234 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 70 209 - -
Lsi05g00523 234 Gene3D WRKY domain 59 111 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00523 234 MobiDBLite consensus disorder prediction 210 226 - -
Lsi05g00523 234 SUPERFAMILY WRKY DNA-binding domain 68 110 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00523 234 SMART WRKY_cls 66 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00523 Lsi-Chr5:6549831 Lsi02g01215 Lsi-Chr2:15697111 2.69E-20 dispersed
Lsi05g00523 Lsi-Chr5:6549831 Lsi01g00960 Lsi-Chr1:7792775 1.74E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25315 PF03106 WRKY 1.20E-12 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00523 - - bhj:120090463 323.939