Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00524 ATGGCTTGTGTAGTTGTCTTGTATTGTTTTGATTTTGTGTTGTCGTTTGAGGTAGAGCCTTCTCCAACTACTGGGTCCTTTACCAAGCTTCCGATGGCACATGATTCTTCTAGCTCAGCTATGTATCCAATGACCACCATGGCTTTCTCAAATACTAATGCCTCAGATGAAGGAAGATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGATAAAGTTGAAGTTTTATCATGTCAGCTTCCACATGCATGTTCCTGCAGATTTTAATCATAGGAAAGGTGAACAATCTTCTGAAGTTCAAGTTCAAGGTCAACCTCAACCATTTACTGCTCCACCCATGACTAAAATTGAGATCAATGTCATTTCAAATGATTTGAGTCGATCAGCCCAGATGGATACACATACAGTTGCCTCAGGGGCTAGTGTTCCTGAAGCCGATGGAGATGATATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTAGTTTCAGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCTCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAACTGATATTATCTACAAGGGTAACCATGATCATCCCAAGCCTCAGCCAAGCAGGCGATATTCTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGGTAGAGAAATAAACTTTTTCCGTCTTTGGTATTTCATAAGTTTAGTCCTTCAACAGGGTGTTAAGCATGACAGGTCTTGCAGCATGTATGCTCAGACACTGCATACCATTGAGGGTAATGGAACTACAGAACCATCCCTGGTGGCAAATGATAGCATCACCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCAGGATGAGGTTGATGACGATGACATATTCTTGAAGCGGAGGTATACTCATTTACAAGTTAAAATGTTCTTGAGTATTCTGCAAAAGAAAAAGCAGCGCAGTGTCTTGCTTTTGTTGAAAATGGAACTTGGTGGTTTCGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAATCCCAACCCGAGGTACGTTTCTTTTCTTATGATGATTGGGTGCATTGGTAAATATCTGTCACACTTGTTAATGGTAATATACATTCAAGCCATAACTTTGTCCATTTTAGTTGCTCGATGA 1392 41.74 MACVVVLYCFDFVLSFEVEPSPTTGSFTKLPMAHDSSSSAMYPMTTMAFSNTNASDEGRSNYFEFKPYVGPNMIKLKFYHVSFHMHVPADFNHRKGEQSSEVQVQGQPQPFTAPPMTKIEINVISNDLSRSAQMDTHTVASGASVPEADGDDINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGNHDHPKPQPSRRYSASASVNVQEDGPDKPSPLTGQDGREINFFRLWYFISLVLQQGVKHDRSCSMYAQTLHTIEGNGTTEPSLVANDSITEGAGTTLPCKNQDEVDDDDIFLKRRYTHLQVKMFLSILQKKKQRSVLLLLKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSFLMMIGCIGKYLSHLLMVIYIQAITLSILVAR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6550848 6558649 - Lsi05G005240.1 Lsi05g00524 663016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00524 463 Gene3D WRKY domain 394 441 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 ProSiteProfiles WRKY domain profile. 402 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 MobiDBLite consensus disorder prediction 232 269 - -
Lsi05g00524 463 SMART WRKY_cls 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 SMART WRKY_cls 407 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 SUPERFAMILY WRKY DNA-binding domain 180 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 MobiDBLite consensus disorder prediction 153 168 - -
Lsi05g00524 463 SUPERFAMILY WRKY DNA-binding domain 399 429 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 MobiDBLite consensus disorder prediction 134 179 - -
Lsi05g00524 463 PANTHER WRKY TRANSCRIPTION FACTOR 20-RELATED 16 359 - -
Lsi05g00524 463 PANTHER WRKY TRANSCRIPTION FACTOR 20-RELATED 376 428 - -
Lsi05g00524 463 Pfam WRKY DNA -binding domain 184 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 Pfam WRKY DNA -binding domain 408 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 Gene3D WRKY domain 177 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 ProSiteProfiles WRKY domain profile. 178 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g00524 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 376 428 IPR044810 GO:0003700
Lsi05g00524 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 359 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00524 - - - bhj:120090463 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00524 Lsi-Chr5:6550848 Lsi07g01425 Lsi-Chr7:20782000 3.10E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g612 . . . . Bpe09g00135 . Bma10g00588 Bma13g01107 Cmo16g00982 Cmo06g00719 . . . . . . . . . . . . . . Cla10g00433 Cam10g0431 Cec10g0454 Cco10g0443 Clacu10g0439 Cmu10g1270 Cre10g0687 Cone6ag0027 Cone9ag0026 Cone14ag1206 . . Csa03g00441 . Cme06g02787 Blo07g00873 Blo10g00861 . Bda12g00951 . Bpe03g00760 . . . . . . Cma16g00943 . Car16g00907 Cpe14g00818 . Bhi11g00499 . . . . . . . . . . . . . Lsi05g00524 . Chy06g01876 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003956 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25316 PF03106 WRKY 3.00E-24 CL0274 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00524 Lsi_Chr05 FPKM 7.394546 10.048131 13.960183 14.1438 25.83814 18.87879 23.146837 23.863253 20.010098 27.090816