Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00526 | ATGATGCCTAGTGTGATGACAGAGTCATCAGATAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATACGGGCGATACGTCGAGCTTCTGGGAACAGGGGCAGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAGGGAATAGAAGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTATATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGGAACCTTAGAGAGTACAGGAAGAAACATAGACAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTCAAGGGTTTGCATTATTTGCATACTCATGACCCTTGTGTTATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTAAAGATTGGTGACTTGGGTTTGGCAGCAACAGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGAACACCAGAATTCATGGCACCTGAGTTATATGAAGAACATTACACTGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTGGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGACAAGGTCAAGGACCCTGAGGTCAAGGCTTTCATTGAGAATTGCCTTGCCGAATCCCGAACTCGGCCCTCGGCCGCTGACCTCCTTCGCCACCCCTTTTTTGGAGAAATTGATGATGACGAAAACGACGACAACAATGATCATTAG | 879 | 42.09 | MMPSVMTESSDKETEAFVEVDPTGRYGRYVELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTHDPCVIHRDLNCSNLFVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALDKVKDPEVKAFIENCLAESRTRPSAADLLRHPFFGEIDDDENDDNNDH | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6578882 | 6581387 | + | Lsi05G005260.1 | Lsi05g00526 | 663018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00526 | 292 | ProSiteProfiles | Protein kinase domain profile. | 27 | 278 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g00526 | 292 | SUPERFAMILY | Protein kinase-like (PK-like) | 29 | 283 | IPR011009 | - | |
Lsi05g00526 | 292 | PIRSF | TyrPK_CSF1-R | 119 | 275 | - | - | |
Lsi05g00526 | 292 | PIRSF | TyrPK_CSF1-R | 27 | 132 | - | - | |
Lsi05g00526 | 292 | Gene3D | Transferase(Phosphotransferase) domain 1 | 110 | 283 | - | - | |
Lsi05g00526 | 292 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 2 | 291 | - | - | |
Lsi05g00526 | 292 | Pfam | Protein kinase domain | 30 | 278 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g00526 | 292 | CDD | STKc_WNK | 25 | 278 | - | - | |
Lsi05g00526 | 292 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 108 | - | - | |
Lsi05g00526 | 292 | PANTHER | SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN | 2 | 291 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00526 | Lsi-Chr5:6578882 | Lsi09g01322 | Lsi-Chr9:21071199 | 6.29E-117 | dispersed | |
Lsi10g00058 | Lsi-Chr10:983975 | Lsi05g00526 | Lsi-Chr5:6578882 | 9.96E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83631 | PF00069 | Pkinase | 1.60E-47 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00526 | K08867 | - | csv:101221172 | 543.888 |