Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00526 ATGATGCCTAGTGTGATGACAGAGTCATCAGATAAGGAGACAGAGGCATTTGTAGAGGTGGATCCGACGGGTCGATACGGGCGATACGTCGAGCTTCTGGGAACAGGGGCAGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAGGGAATAGAAGTAGCTTGGAACCAAGTGAAACTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTATATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGGAACCTTAGAGAGTACAGGAAGAAACATAGACAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTCAAGGGTTTGCATTATTTGCATACTCATGACCCTTGTGTTATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTAAAGATTGGTGACTTGGGTTTGGCAGCAACAGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGAACACCAGAATTCATGGCACCTGAGTTATATGAAGAACATTACACTGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTGGTCACTTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGACAAGGTCAAGGACCCTGAGGTCAAGGCTTTCATTGAGAATTGCCTTGCCGAATCCCGAACTCGGCCCTCGGCCGCTGACCTCCTTCGCCACCCCTTTTTTGGAGAAATTGATGATGACGAAAACGACGACAACAATGATCATTAG 879 42.09 MMPSVMTESSDKETEAFVEVDPTGRYGRYVELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTHDPCVIHRDLNCSNLFVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALDKVKDPEVKAFIENCLAESRTRPSAADLLRHPFFGEIDDDENDDNNDH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6578882 6581387 + Lsi05G005260.1 Lsi05g00526 663018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00526 292 ProSiteProfiles Protein kinase domain profile. 27 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00526 292 SUPERFAMILY Protein kinase-like (PK-like) 29 283 IPR011009 -
Lsi05g00526 292 PIRSF TyrPK_CSF1-R 119 275 - -
Lsi05g00526 292 PIRSF TyrPK_CSF1-R 27 132 - -
Lsi05g00526 292 Gene3D Transferase(Phosphotransferase) domain 1 110 283 - -
Lsi05g00526 292 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 291 - -
Lsi05g00526 292 Pfam Protein kinase domain 30 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g00526 292 CDD STKc_WNK 25 278 - -
Lsi05g00526 292 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Lsi05g00526 292 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00526 Lsi-Chr5:6578882 Lsi09g01322 Lsi-Chr9:21071199 6.29E-117 dispersed
Lsi10g00058 Lsi-Chr10:983975 Lsi05g00526 Lsi-Chr5:6578882 9.96E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83631 PF00069 Pkinase 1.60E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00526 K08867 - csv:101221172 543.888