Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00529 ATGTATAGGCTTCAATTTCTTTCAGAATCAGTAACAATGAAGTCGAATACAGCAGAATCAATGGAGACTGGTTTCTTGGGAAATATATCTGCTTCTTCCTTTCGAAACTTCCTTCCTCGATCCATCTCTTCTAAGAAAAACCTCATTTCCTCCATTTCTAAGAAAACTCCCAAATCTAACTCTGAAAATACCCCTCCTATTCACCCAAACATTCCTCTCAAGGACCATCAAATTTCCATTTCCAAGTCCGCCTTCGCCCCAGATTCCAATCTCGATCTGTCTGCATCTCAACCTCTTAATTTGAAGGAAGAAGTTGTCCAATCAGACAGTCAGTATGAAGTTCCTAACCCTCCTGATCCACCGATTAAAGTTGTTGTGAGAATTAGACCTAATGATAGAGAGGAGGAAGTGGAGAGGACGGTTAAGCGGATTTCGTCAGATGAATTGACGTTTGGGGACCGTAAATTTTCGTTTGATTCGGTTTTCGATTCAGATTCGAAACAGGTACTGTGCTTGATCCTTTCTCTTTATAATCCGAACAACGTTAGTTTGCTGTCTCAGAAATTATTAGTTTCGGATTTAAAGCAAGAAGAAGATATCTTTTCGAAGATTGGAATTCCGCTAGTCAAAGATGCGTTGGCTGGTTATAACACTTCCATCATGTCATTTGGTCAGACGGGAAGTGGTAAGACATTCACAATGTGGGGTCCTCCAAGTGCCATGGTTGAAGATCCTTCACCCTTTAGTAACCAAGGCCTTGCTCCTCGCATCTTCCAAATGCTGTTTTCAGAAATTCAGAAAGAACAATTAAATTCTGAAGGAAAATTGATAAATTATCAGTGTCGTTGTTCTTTTGTAGAGATATTTAATGAACAAATTGGGGATTTGCTTGATCCTACGCAGAGGGACCTTAAGATAAAGGATGATGCAAAGAATGGATTGTATGTGGAGAATGTCACAGAGGAATACGTGACAAGCTATGATGATGTGACTCAAATTCTTATCAAGTCAACCATTGCAATTCAGGTTTCATTTGCTTACGTTTCTCTATCTACGATGCAGGGACTGTCGAGTAGAAAAGTCGGAGCAACCACTATAAATTCTAAGAGCTCTAGGTCTCATATTGTGTTTACTTTCATCATCGAGTCATGGTGCAAGGAAACATCATCCAAGTGTTTTGGTAGTTCAAAGACGAGCAGAATCAGCCTTGTTGATCTTGCTGGATTGGATAGGAATGTAAACGATGCCCTGGGTAGACATTCCACAAGAGAAGGAAAGCATTTGAAGAAGTCGATGTCACGGCTCGGGCACTTGATCGATTCATTATCTAAAGAAACTGAATTAAAACCATCTGAAGATCGTTTGTACAGAGGTTCCTGCTTGACCCATTTATTGAGAGAGTCATTGGGGGGAAATGCTAAGCTCACAGTTATTTGTGCTATCTCTCCAGATAACAACCATTCAGGTGAGACATTAAGGACGTTAAGATTTGGACAACGATTGAAATCCATTAAGAATCAACCAATCATAAATGAAATAAAGGAAGATGATGTAAATGATCTGAGCGATCAAATTCGTCAACTAAAGGAAGAACTTATAAGAGCAAATGCCAATTCAGGAAAGTCGGTTGGAAGGACAGGTTACTTTCAAGGGCCTAATGTAAGAGACAGCCTGAATCATTTAAGAGTTAGTATCAATCGCTCTCTGATTTTGCCATGCATTGATAATGACTCAGACGAAGAGGTTAGTTGTAATGAGGAAGATGTGAGGGAACTGCATCAGCAACTGGATAAGGTCCATAGCTTTTCTGAAGAGAACTCAGATAGAAGAGATTCACTTCACTTTTCCTCTGTAGGAGAAAGTTTTGCTTCATATTCAATGAGTGATGATGAAGTAAGCTATCCCCAAACAATTGAAGAAATAAACCCAGAAGAACATCAGGATGAAAATTTTCATGAGGATAAGATTATTTTAGCAGATGATCTTAGTAGCCATGATTCCAAGGTTCCTGATCCTGTGAATCGAAGGAGTATTTCTGTCAGCTCATTCCATCACTTTCCTAATCTTGAAGATCCACCCTTGTCTGAGTCTCCAAAAATTGGAAATTCTCAAAGGAAAAGTTTGGCTGTTGCACCAAGTTTTGCAGACCACCATGAAAGTAAGATGTCAGACAGCTTTAAGTTTAACAAAGATGTACTGAGGCAGTCACTGAGTCAGAGTAAAAACATCAGATCCTCACTGCGATCGAGCAATAAATTTGAGGATCCTACTGAGTCATTGGCAGCTAGTCTTCAAAGAGGTTTGAAGATAATTGATTATCACCAGCAAAGCTCAGCATTAAACAAATCTTCAGTATCCTTCTCCTTTGAACACCTGGCGCGAAAATCATGTCCAGAAGTCAACAAAGCTGTAGCGTCGCTTCAAACATTGGAAGAAGATAATTCCATTGCCATATCTTCTCCCCATCAGCTTTGTGCATCTTGCCAAAGAAGAATTACCGAGAATGACACAAGTGAAGCCCTGAGTAGCTCCAACGAACTTGTAGAAGTAGACGATCTTGAAAAGTATCATATTGAATATATGGTTTATAACACATCTGACATTCAATATGTGTGGAATAATACTCAGCAGGAGAGTGTACAAGAGAAATGTGAAATAAAGGAAGTGCAAGAGGTTCAAGACAATGAAAATTGTTTTACCGATGTGTCTGAGAAGGAAGAACTTCTTAAAGAAATTCAAAATTTAAGGAGTAAGCTGCAGGCATTTGCTGATGTTTCTGCTAGCAAGTCAACTGACAAGCTGAGATCCTCGCTGTTGTTGTCACGCTCGATCCAACTCAGAAAAAGCGGTCTCGGAAGAGGAGGTTGCCAAACTACTAATGAGGAGGAACTTGAAAAGGAAAGGGAGAGATGGACTGAAATGGAGAGTGAGTGGATTTCTTTAACTGATGAATTGAGAGTTGATTTGGAATCCATTCGACAGCGTGCGGAGAAGGTGGAGCAGGAACTGAACACGGAGAAGAAGTGCAATGAGGAGTTGGAGGATGCCCTTCACAGATCTGTTCTTGGACATGCTAGATTTGTTGAGCATTATGCTGAATTGCAAGAGAAATATAATGAGTTGGTTGGTAAGCACCGTGCCATCATGGGAGGGATAGCTGAGGTGAAAAAGGCTGCACAAAAAGCTGGTTCCAAAGGCCACGGTTCTCGCTTTTCAAAATCACTTGCTGCTGAGCTTTCAGCTTTGAGATTTGAGAGGGACAGAGAAAGAGAATTCTTGAAAAAGGAAAACAAAAGCCTTAAGCTCCAACTTAGAGACACTGCTGAAGCTGTTCATGCTGCTGGGGAACTTCTTGTTAGGCTTAGAGAAACAGAAAATTCAGCATCAGTTACAGAGGAGAACTTTACATCAGTTCAACAAGAAAACGAGAAGTTGAAGAAGCAAATGGAGAAGCTCAAAAGAAAACATAAAATGGAGATGATTACAATGAAGCAGTACCTTGCAGAGAGCAAACTGCCAGCTTCTGCTCTCGAACCACTGTATCACGATCACTCCGACGTCGGAACTGACAAGAGAGCTTCGTATGTGGACGATGATCAAGCCTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTACTAA 3648 40.49 MYRLQFLSESVTMKSNTAESMETGFLGNISASSFRNFLPRSISSKKNLISSISKKTPKSNSENTPPIHPNIPLKDHQISISKSAFAPDSNLDLSASQPLNLKEEVVQSDSQYEVPNPPDPPIKVVVRIRPNDREEEVERTVKRISSDELTFGDRKFSFDSVFDSDSKQVLCLILSLYNPNNVSLLSQKLLVSDLKQEEDIFSKIGIPLVKDALAGYNTSIMSFGQTGSGKTFTMWGPPSAMVEDPSPFSNQGLAPRIFQMLFSEIQKEQLNSEGKLINYQCRCSFVEIFNEQIGDLLDPTQRDLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKSTIAIQVSFAYVSLSTMQGLSSRKVGATTINSKSSRSHIVFTFIIESWCKETSSKCFGSSKTSRISLVDLAGLDRNVNDALGRHSTREGKHLKKSMSRLGHLIDSLSKETELKPSEDRLYRGSCLTHLLRESLGGNAKLTVICAISPDNNHSGETLRTLRFGQRLKSIKNQPIINEIKEDDVNDLSDQIRQLKEELIRANANSGKSVGRTGYFQGPNVRDSLNHLRVSINRSLILPCIDNDSDEEVSCNEEDVRELHQQLDKVHSFSEENSDRRDSLHFSSVGESFASYSMSDDEVSYPQTIEEINPEEHQDENFHEDKIILADDLSSHDSKVPDPVNRRSISVSSFHHFPNLEDPPLSESPKIGNSQRKSLAVAPSFADHHESKMSDSFKFNKDVLRQSLSQSKNIRSSLRSSNKFEDPTESLAASLQRGLKIIDYHQQSSALNKSSVSFSFEHLARKSCPEVNKAVASLQTLEEDNSIAISSPHQLCASCQRRITENDTSEALSSSNELVEVDDLEKYHIEYMVYNTSDIQYVWNNTQQESVQEKCEIKEVQEVQDNENCFTDVSEKEELLKEIQNLRSKLQAFADVSASKSTDKLRSSLLLSRSIQLRKSGLGRGGCQTTNEEELEKERERWTEMESEWISLTDELRVDLESIRQRAEKVEQELNTEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKKAAQKAGSKGHGSRFSKSLAAELSALRFERDREREFLKKENKSLKLQLRDTAEAVHAAGELLVRLRETENSASVTEENFTSVQQENEKLKKQMEKLKRKHKMEMITMKQYLAESKLPASALEPLYHDHSDVGTDKRASYVDDDQAWRSEFGAIYQEQHY 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6616638 6634792 + Lsi05G005290.1 Lsi05g00529 663021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00529 1215 Pfam Kinesin motor domain 136 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 Coils Coil 511 538 - -
Lsi05g00529 1215 PRINTS Kinesin heavy chain signature 400 418 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 PRINTS Kinesin heavy chain signature 364 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 PRINTS Kinesin heavy chain signature 215 236 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 PRINTS Kinesin heavy chain signature 454 475 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 537 IPR027417 -
Lsi05g00529 1215 MobiDBLite consensus disorder prediction 51 72 - -
Lsi05g00529 1215 MobiDBLite consensus disorder prediction 51 67 - -
Lsi05g00529 1215 Coils Coil 1128 1162 - -
Lsi05g00529 1215 PANTHER CENTROMERE PROTEIN E 88 168 - -
Lsi05g00529 1215 Coils Coil 1090 1110 - -
Lsi05g00529 1215 PANTHER KINESIN-LIKE PROTEIN KIN-12F 193 854 - -
Lsi05g00529 1215 PANTHER KINESIN-LIKE PROTEIN KIN-12F 873 1213 - -
Lsi05g00529 1215 MobiDBLite consensus disorder prediction 684 714 - -
Lsi05g00529 1215 Gene3D Kinesin motor domain 119 543 IPR036961 -
Lsi05g00529 1215 Coils Coil 982 1016 - -
Lsi05g00529 1215 ProSiteProfiles Kinesin motor domain profile. 121 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g00529 1215 PANTHER CENTROMERE PROTEIN E 193 854 - -
Lsi05g00529 1215 PANTHER CENTROMERE PROTEIN E 873 1213 - -
Lsi05g00529 1215 PANTHER KINESIN-LIKE PROTEIN KIN-12F 88 168 - -
Lsi05g00529 1215 Coils Coil 905 925 - -
Lsi05g00529 1215 SMART kinesin_4 119 512 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00529 K10400 KIF15; kinesin family member 15 - csv:101203593 1916.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00529 Lsi-Chr5:6616638 Lsi05g01354 Lsi-Chr5:21432590 2.77E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00529 Lsi_Chr05 FPKM 72.210526 73.887703 47.427727 45.408726 23.727577 15.55821 24.567587 93.98246 94.869217 114.955589