Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00531 ATGGCTCTACAAAATTTTGGTTCATTAATCAAAGAGCCTCGTTTTGTAGTGAAAAAGTTTCTTGCTAGACCTCAACATGAAGGCCTTGGCGCTGTTGTAAGAAGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCATTCCTTGTTCTTGATGAGTTTTCTGTTACTGCACCTGCTGGGTTTCCTGATCATCCACATAGGGGATTTGAAACTGTCACCTACATGTTACAGGGCGCAATGAAACATGAAGATTTTAAAGGACATAAAGGAAGAATTGGAGCTGGTGACTTGCAATGGATGACTGCAGGGAAAGGCATTGTTCACTCTGAAATGCCTGCATCCCATGGCACCCAACATGGCTTACAACTTTGGATCAATCTTTCCTCCAAACACAAAATACTTCACTCTCGGCCCGGGATCTCGCATCGAGCAGCCGATCCCGGTGGGGTGGAACGCATTTGTCTACGTGCTAGAAGGCGAGGGCGGCATGTTCGGGAGCATGAAATCGATGCCGATTACGCCACATCACCTTCTTTTGTTGGGGAATGGGGATGGGTTGGAGGCTTGGAACAAGTCCTCCTCCAAAGCCCTAAGGTTCATATTGGTTGGGGGTCAGCCATTGAATGA 630 46.98 MALQNFGSLIKEPRFVVKKFLARPQHEGLGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAMKHEDFKGHKGRIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKILHSRPGISHRAADPGGVERICLRARRRGRHVREHEIDADYATSPSFVGEWGWVGGLEQVLLQSPKVHIGWGSAIE 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6642421 6645394 - Lsi05G005310.1 Lsi05g00531 663023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00531 209 CDD cupin_pirin_N 31 128 - -
Lsi05g00531 209 PANTHER OS09G0484800 PROTEIN 8 137 - -
Lsi05g00531 209 Gene3D Jelly Rolls 27 134 IPR014710 -
Lsi05g00531 209 SUPERFAMILY RmlC-like cupins 14 145 IPR011051 -
Lsi05g00531 209 PANTHER PIRIN-RELATED 8 137 IPR012093 -
Lsi05g00531 209 Coils Coil 207 209 - -
Lsi05g00531 209 Pfam Pirin 33 126 IPR003829 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g01863 Lsi05g00531 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00531 Lsi-Chr5:6642421 Lsi07g00089 Lsi-Chr7:986229 3.28E-57 dispersed
Lsi02g01863 Lsi-Chr2:24382275 Lsi05g00531 Lsi-Chr5:6642421 6.62E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00531 K06911 - qsu:112022601 244.973