Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g00543 | ATGGAGATGAGAGTTCAATTTGCTGTTATTAATGCGTCTCTGCTTGTCAGGTTGGTGATGGCACCTTCTGATTTATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATAGCATGATTTCTGAAAGGAGTTCCTTTCCTGCATCTGGACCAGAATCTCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTATGAAAAGGAGATAAATCGACGTAAAGACATGCTTGCTCAGATGAGATCTAAAGTAAAGCAGATGGCCTCAAGTTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTGCTCGGCCCAGATACAAAATCGGCGGATGTAATGAGCAAGACAGCTGGACTAGACAATCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCATTAGCAGTTAATGAAGAACTCAATCTTCACACTCGCCTAATTGATGACCTGGACCAGCATGTCGATGTTACAGACTCGAGATTAGCGATATCTTTAGGATGTAGAGATAATTTATCACTAGTTGAAGTTAGATGTGGTAAATTCGTCTGTATATATACATCAAGGTTGTTCCTGACCTTGAATGAACAGCAGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGAGAGCTGCTCTTGCTTTGGAATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTCATTGCTGTCATATGGCTGCTCATTCGATACTTGTAA | 861 | 41.23 | MEMRVQFAVINASLLVRLVMAPSDLWIKEYNEASKLGDDINSMISERSSFPASGPESQRHASAIRRKITILGTKVDGLQSLLLKLPVKQPLYEKEINRRKDMLAQMRSKVKQMASSLNMSNFANRDSLLGPDTKSADVMSKTAGLDNQGLVGFQRQIMKEQDEGLEKLEETIISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLAISLGCRDNLSLVEVRCGKFVCIYTSRLFLTLNEQQRVQKRLGILNKRAKESCSCFGMLLSVVGIVVLIAVIWLLIRYL | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6752568 | 6754952 | + | Lsi05G005430.1 | Lsi05g00543 | 663035 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g00543 | 286 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 241 | 281 | - | - | |
| Lsi05g00543 | 286 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 20 | 208 | - | - | |
| Lsi05g00543 | 286 | CDD | SNARE_Qc | 158 | 207 | - | - | |
| Lsi05g00543 | 286 | Gene3D | - | 157 | 211 | - | - | |
| Lsi05g00543 | 286 | PANTHER | SYNTAXIN | 241 | 281 | IPR045242 | - | |
| Lsi05g00543 | 286 | PANTHER | SYNTAXIN | 20 | 208 | IPR045242 | - | |
| Lsi05g00543 | 286 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 155 | 207 | IPR000727 | - | |
| Lsi05g00543 | 286 | SUPERFAMILY | SNARE fusion complex | 146 | 208 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01877 | Lsi-Chr2:24587361 | Lsi05g00543 | Lsi-Chr5:6752568 | 1.08E-116 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g00543 | K08503 | - | csv:101223140 | 390.963 |