Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00545 ATGGCAACTTTTCAGCTCACAAATCTATCATCTTCTTCAGTTCCCCCTCAGTTTCATCTTAACACATCCTTCTTTCCCTCCAACTTTCCCTGGACTTGTTCATCTTCTAATGCCAAGCGGAAATTTCCGTCTCGAAGACACCATCTTGGTGTTGTGGGCTGCTCATTTTCCCCTATGGAGTCTGCTAAGATTAAGGTTGTGGGAGTTGGTGGAGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTGAAGGGTGTTGATTTCTATGCTATAAATACGGATTCTCAAGCTCTACTACAGTCTGCTGCTGAGAATCCACTTCAAATTGGAGAGCTTCTGACGCGCGGGCTAGGTACTGGCGGGAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGCGATAGCTGGTGCTCTCAAGGGCTCTGATCTTGTATTTATAACGGCTGGTATGGGTGGTGGCACTGGGTCTGGTGCAGCCCCTGTCGTTGCCCAGATTTCCAAGGAGGCAGGTTACCTTACTGTTGGTGTTGTTACTTTTCCATTCAGTTTTGAAGGAAGAAAACGATCCTTGCAGGCATTGGAGGCCATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTAATCCCCAATGATAGGTTGCTTGATATTGCTGATGAACAGACTCCTCTTCAAGACGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTACAAGGAATTTCTGATATAATTACGATTCCAGGGCTGGTCAATGTGGATTTTGCTGACGTGAAAGCCGTTATGAAAGACTCAGGAACTGCAATGCTCGGAGTTGGTGTTTCCTCTAGCAAAAATCGTGCAGAAGAGGCAGCTGAGCAAGCAACTTTGGCCCCGTTGATTGGATCCTCAATTCAGTCAGCTACAGGAGTAGTATATAACATTACTGGAGGAAAGGACATAACTCTACAGGAAGTGAACAGAGTGTCTCAGGTTGTGACAAGTTTGGCAGATCCATCTGCAAACATAATATTTGGAGCAGTTGTGGATGATAGGTACAGTGGAGAAATCCATGTAACTATAATTGCAACAGGGTTCTCTCAGTCCTTTCAAAAGACATTATTGGCTGACCCCAGGGCTTCAAAACTTATTGATAAAGTGACTGGAGGAGCTCAAGAAAAAGGTAGCAAGGCTTCTTCAACCCTCCCTCTTAACTTGTCGCCTGCTGCTTCACCGACACTTCCTAATCGAGGTCGAAGGCTCTTCTTTTAG 1269 45.39 MATFQLTNLSSSSVPPQFHLNTSFFPSNFPWTCSSSNAKRKFPSRRHHLGVVGCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIAGALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKVTGGAQEKGSKASSTLPLNLSPAASPTLPNRGRRLFF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6765044 6769914 - Lsi05G005450.1 Lsi05g00545 663037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00545 422 Hamap Cell division protein FtsZ [ftsZ]. 59 388 IPR000158 GO:0003924|GO:0005525
Lsi05g00545 422 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 5 422 IPR045061 GO:0003924|GO:0005525
Lsi05g00545 422 MobiDBLite consensus disorder prediction 392 409 - -
Lsi05g00545 422 CDD FtsZ_type1 79 364 IPR000158 GO:0003924|GO:0005525
Lsi05g00545 422 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 156 162 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lsi05g00545 422 Pfam Tubulin/FtsZ family, GTPase domain 63 223 IPR003008 GO:0005525
Lsi05g00545 422 SUPERFAMILY Tubulin nucleotide-binding domain-like 62 258 IPR036525 -
Lsi05g00545 422 Gene3D Tubulin/FtsZ, GTPase domain 56 270 IPR036525 -
Lsi05g00545 422 MobiDBLite consensus disorder prediction 390 409 - -
Lsi05g00545 422 ProSitePatterns FtsZ protein signature 2. 147 168 IPR020805 GO:0005525
Lsi05g00545 422 TIGRFAM ftsZ: cell division protein FtsZ 58 372 IPR000158 GO:0003924|GO:0005525
Lsi05g00545 422 SMART Tubulin_C_4 257 374 IPR018316 -
Lsi05g00545 422 Pfam FtsZ family, C-terminal domain 272 365 IPR024757 -
Lsi05g00545 422 ProSitePatterns FtsZ protein signature 1. 94 128 IPR020805 GO:0005525
Lsi05g00545 422 PRINTS Cell division protein FtsZ signature 176 197 IPR003008 GO:0005525
Lsi05g00545 422 PRINTS Cell division protein FtsZ signature 239 261 IPR003008 GO:0005525
Lsi05g00545 422 PRINTS Cell division protein FtsZ signature 262 283 IPR003008 GO:0005525
Lsi05g00545 422 PRINTS Cell division protein FtsZ signature 148 168 IPR003008 GO:0005525
Lsi05g00545 422 SUPERFAMILY Tubulin C-terminal domain-like 257 372 IPR008280 -
Lsi05g00545 422 SMART Tubulin_4 63 255 IPR003008 GO:0005525
Lsi05g00545 422 Gene3D - 271 376 IPR037103 -
Lsi05g00545 422 PANTHER BNAA02G09160D PROTEIN 5 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00545 K03531 ftsZ; cell division protein FtsZ - csv:101222908 733.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01897 Lsi-Chr3:30346025 Lsi05g00545 Lsi-Chr5:6765044 3.82E-110 dispersed
Lsi05g00545 Lsi-Chr5:6765044 Lsi01g01223 Lsi-Chr1:10445233 7.54E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00545 Lsi_Chr05 FPKM 1.601732 0.0 2.807779 3.631716 2.85016 2.351827 4.35718 1.225722 1.066182 1.100841