Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00561 ATGGCGAGCGAGACCGAGCCGGCGAAGCTTCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCATGAACCTCTTGTTGCATATTACTGTCGATTATATGCTATGGAACGCGGACTGAAGATTCCACAGGGCGAACGTACCAAGACCACGAATGCCCTTCTTGTTTCCCTCATGAATCAGCTCGAAAAGTCTGTGGCCTTTAGCTCTCCATGGGCTAACAGTAATTGGCATCTGTCCTACCTTGGCCTTCCTTCTGGTGGCAATCCTGAGTTGGATAAGAAGTCACTCAACCTTGGGCCTGATGACAGTTTGCATCTAGAGGGTTTTGCATTGAATGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTTGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACCTGGAGCAGAAACGGAAATATGCAGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAACCACAGCCTGGTCCACCCTCTGGTGATGATGATCTGTCTGTTCCTTCAAGTACGCCTACCAGTGCAAATGATGTAAGACCAGGAGAGCCTCAAGTCTCGAGAACTCAATCGCAATCAGATTCATTGCCTCAGGTTTATGATAAGGCTAATGACAATCACGCAAATATCCCACAAAGTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACACATCTCCACCCGCCCAATTCCATAATGAAGTTGACAATCAGCACCCTTCAAATATTCCATCATACCCTGCAGCTGGTTATCCACCCCATGAGTTTCATCTACCTCCTCCGAGGAATGAACCAGACAGTTCCTCTTACACTCAGCCGTACCACCACATCCAATCCTACTCACAAGAGCATCAACAACAGCCTTTGCCTCATAATTATCCATCTAATGAAACCTCCCCTAATTACGCTTATCCCCATTTCCAATCTTATCCAAGTTTCTCGGAAAGCAGCCTCCCGGCTGCTCCTCCTCACTATCCGACCTATTACCAAGGATCCGATGCTTCATATTCTTCTCAAGTGACTCCTCCTCCTGCCAGCTACCCATCAGCTTCCCAGTATCATTCAAATGGCAGAGAGGGGACGACCTCAGAACCTCAACCTACCCCAGCTCCAGCCAAGTCATACCACTACGACAGCAACTACCAGCCAGCTCCTGAGAAAATTGCCGAGGCACACAAGGCTGCAAGGTTTGCAGTAGGGGCTCTGGCGTTTGATGATGTTTCAGTTGCAGTAGAGCACTTAAAGAAATCACTGGAATTGTTGACTAATCCTTCAGCCAATGCGTGA 1371 47.48 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQGERTKTTNALLVSLMNQLEKSVAFSSPWANSNWHLSYLGLPSGGNPELDKKSLNLGPDDSLHLEGFALNVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDDDLSVPSSTPTSANDVRPGEPQVSRTQSQSDSLPQVYDKANDNHANIPQSPQVYDNMNNHTSLNTSPPAQFHNEVDNQHPSNIPSYPAAGYPPHEFHLPPPRNEPDSSSYTQPYHHIQSYSQEHQQQPLPHNYPSNETSPNYAYPHFQSYPSFSESSLPAAPPHYPTYYQGSDASYSSQVTPPPASYPSASQYHSNGREGTTSEPQPTPAPAKSYHYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVEHLKKSLELLTNPSANA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6967252 6974854 - Lsi05G005610.1 Lsi05g00561 663053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00561 456 Gene3D - 3 180 IPR023175 -
Lsi05g00561 456 MobiDBLite consensus disorder prediction 190 272 - -
Lsi05g00561 456 MobiDBLite consensus disorder prediction 174 335 - -
Lsi05g00561 456 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 454 IPR044538 GO:0032511
Lsi05g00561 456 MobiDBLite consensus disorder prediction 292 335 - -
Lsi05g00561 456 Gene3D Immunoglobulin FC, subunit C 412 451 - -
Lsi05g00561 456 MobiDBLite consensus disorder prediction 360 414 - -
Lsi05g00561 456 MobiDBLite consensus disorder prediction 360 403 - -
Lsi05g00561 456 Pfam Vta1 like 13 176 IPR039431 -
Lsi05g00561 456 Pfam Vta1 C-terminal domain 413 450 IPR041212 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00561 K12199 VTA1, LIP5; vacuolar protein sorting-associated protein VTA1 - csv:101217617 801.201
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g577 . . . . Bpe09g00150 . Bma10g00579 Bma13g01092 Cmo16g00949 Cmo06g00890 . . . . . . . . . . . . . . Cla10g00471 Cam10g0459 Cec10g0480 Cco10g0468 Clacu10g0478 Cmu10g1307 Cre10g0712 . . Cone14ag1181 Cone15ag1198 . Csa03g00473 . Cme06g02835 Blo07g00882 Blo10g00850 Bda05g00695 Bda12g00936 . Bpe03g00771 . . Sed08g2974 . . . Cma16g00914 . Car16g00887 Cpe14g00739 . Bhi11g00573 Tan01g1750 Cmetu06g1656 . . . . . . . . . . . Lsi05g00561 . Chy06g01849 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004471 2 1 2 3 2 1 2 1 0 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00561 Lsi_Chr05 FPKM 3.037736 5.274563 4.257228 4.449419 7.602081 6.282619 9.699566 9.535718 9.654134 10.128508