Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00562 ATGGCGGTGGCAGATACACAAAATCCTCTTCAAGGAGAAACCACATGCGGTACCCTACTGCAGAAACTGCAAGAAATTTGGGATGAAGTTGGTGAAAGTGATGAGGAACGAGATAAAATGCTGCTTCAGATAGATCAAGAATGTTTGGATGTCTACAAAAGGAAAGTTGAGCAAGCTGATAAGTCAAGGGCAAAACTTTTGCAGTCTTTATCAGATGCAAAGCATGAGCTTTCCAGTCTTCTATCTGCTCTTGGTGAAAAAAGTTTTTCTGAATTTCCTGAGAAGGCTGCTGGAACAATCAAAGAACAGCTTGCAGCCATAGCTCCAGCTCTCGAACAGCTTTGGAAACAGAAAGAGAAGAGGGTTAAGGAATTTTTTGATGTACAATCAGAGATTCAGAAGATATGTGGGGAGATTGCTGGGAGTTTAAACCTTAGCGAGAATCCAGTAGTAGATGAATCTCAGCTTTCGGTAGAAAAGCTGGACGAATACCATTGCCAACTTCAGGAACTGCAGAAAGAAAAGGTGAACACCGTGCATGATCTGTGTGCTGTCCTTGGAATTGATTTCTTTGCTACTGTAACTGAGGTTCACCCAAGCTTAAATGACGCAACTGGTGTGCAATCTAAAAGCATTAGCAACGATACTTTATCCAAGCTGGCAAAGATGGTCTTAGCACTAAAAGAAGATAAAAAGCAAAGGCTACATAAGCTTCAAGAATTGGCAACTCAGCTGATTGATCTTTGGAATTTGATGGATACCCCCTCAGAAGAAAGAAGTTTATTTGACCATGTCACGTGTAATATATCAGCATCAGTAGATGAAGTGACTGTCCCAGGGGCTCTTGCTCTTGATTTGATTGAGCAGGCTGAGGTGGAGGTTGAGAGGCTTGATCAACTCAAGGCTAGTAGGATGAAGGAAATTGCTTTCAAGAAGCAATCTGAACTTGATGAGATATTTTCTCATGCTCACATAGAAATAGACCCAGAGGCAGCACGAGAAAAAATTATGGCACTGATTGATTCTGGTAATGTTGAGCCTGCTGAATTACTGGATGACATGGACGATCAAATAGCAAAGGCCAAAGAAGAAGTTCTCAGCAGGAAAGAAATCTTAGACAAGGTTGAAAAATGGATGTTGGCATGTGAAGAAGAGAGCTGGCTAGAAGACTACAATCGGGATGATAATAGGTACAATGCTAGCAGAGGGGCTCATTTGAATCTCAAACGTGCAGAGAAAGCTAGAATTCTGGTCAACAAAATTCCAGCTCTTGTTGACACTTTAATTGCCAAAACTCGGGCTTGGGAGGAAGATCGTGGCATATCGTTTATTTACGACGGTGTTCCTCTCCTTGCTATGCTAGACGAATATACCATGCTCAGGCATGAAAGAGAGGAAGAAAAACGACGATTGAGGGACCATAAAAAATTTCATGAGCAGCAAACCACAGACCCAGAGATCATCACCAACTCAAGGCCTAGCCCTGCTCGACCCATTGGTACAAAGAAGGCAGCGGGGCCTCGTGCGAATGGAGCTGCAAACGGAACACCTAGCAGCAGACGGTTATCGCTTAATCAAAATGGATCTAGATCAATGAACAAAGATGGAAAAAGGGACAGTATGAGACCAATGACACCCGTGAAATACGATGCAATCTCGAAAGAAGACTCTGCCTCACACATTTCAGGTACCGAACCTGTTTCATCTTCACCATGA 1716 42.83 MAVADTQNPLQGETTCGTLLQKLQEIWDEVGESDEERDKMLLQIDQECLDVYKRKVEQADKSRAKLLQSLSDAKHELSSLLSALGEKSFSEFPEKAAGTIKEQLAAIAPALEQLWKQKEKRVKEFFDVQSEIQKICGEIAGSLNLSENPVVDESQLSVEKLDEYHCQLQELQKEKVNTVHDLCAVLGIDFFATVTEVHPSLNDATGVQSKSISNDTLSKLAKMVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERSLFDHVTCNISASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQSELDEIFSHAHIEIDPEAAREKIMALIDSGNVEPAELLDDMDDQIAKAKEEVLSRKEILDKVEKWMLACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLIAKTRAWEEDRGISFIYDGVPLLAMLDEYTMLRHEREEEKRRLRDHKKFHEQQTTDPEIITNSRPSPARPIGTKKAAGPRANGAANGTPSSRRLSLNQNGSRSMNKDGKRDSMRPMTPVKYDAISKEDSASHISGTEPVSSSP 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6981158 6986983 - Lsi05G005620.1 Lsi05g00562 663054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00562 571 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 496 - -
Lsi05g00562 571 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 5 571 IPR007145 GO:0000226|GO:0008017
Lsi05g00562 571 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 1 5 571 - -
Lsi05g00562 571 Coils Coil 287 307 - -
Lsi05g00562 571 Coils Coil 56 76 - -
Lsi05g00562 571 MobiDBLite consensus disorder prediction 557 571 - -
Lsi05g00562 571 Coils Coil 461 481 - -
Lsi05g00562 571 Coils Coil 228 248 - -
Lsi05g00562 571 MobiDBLite consensus disorder prediction 468 482 - -
Lsi05g00562 571 MobiDBLite consensus disorder prediction 512 531 - -
Lsi05g00562 571 Coils Coil 161 181 - -
Lsi05g00562 571 MobiDBLite consensus disorder prediction 468 571 - -
Lsi05g00562 571 Gene3D - 357 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00562 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101217855 1055.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00743 Lsi-Chr4:6907531 Lsi05g00562 Lsi-Chr5:6981158 1.05E-148 dispersed
Lsi05g00562 Lsi-Chr5:6981158 Lsi09g00538 Lsi-Chr9:5652628 6.41E-172 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g575 . . Bda07g00378 Bda09g00408 Bpe09g00151 Bpe08g01113 . Bma13g01085 . Cmo06g00891 . . . . . . . . . . . . . . Cla10g00472 Cam10g0460 Cec10g0481 Cco10g0469 Clacu10g0479 Cmu10g1308 Cre10g0713 . Cone9ag0051 Cone14ag1180 Cone15ag1195 . Csa03g00474 . Cme06g02836 Blo07g00883 . . . . . Bma07g01285 Bma14g00324 Sed08g2977 . . . . . . . . Bhi11g00574 Tan01g1748 Cmetu06g2464 . . . . . . . . . . . Lsi05g00562 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00562 Lsi_Chr05 FPKM 6.943953 7.299221 15.769417 15.065204 10.519171 11.560444 10.137278 18.706264 16.918936 15.638485