Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00567 ATGGAGCTCTTCACATTCAATTTCTCTTCAACCATTTTCAATCACTCTCCATGGCGGCCTTCTCTTTCTTCTCCTTCCTCAATTTCTGCTTCGTTCTCCAAAACCCCTTTGCTTCATTGCAACAATCTTCGCTTTCTTCCTCCTCCATTTCACCTCCTTCACCCTCTTCAAATCTTCCCCACTTCCTGCCGATTTGCTTCTCCAGCTTCTTCGCCTTCTTCCGTCGATCTTGGCCCTAAGATCGACAAGCTTCCTGCGGACCTGGAGATTTCCGAGACCGAAGAGCCTAATTCCAGAGTTAGATTGAGTGTAGGAGTTCCACCAGCTGTTTGTGAGGATTGTCATAGCAGGGTCATAGCTGAGTTCATGAAGCAGGCCAAGATCCCAGGATTTCGTCCTGGAAAGAAAGTTCCAGAAAGTATTCTTGTAAGTTATGTAGGAAAGGACCATGTTCAGAAGGCCATTGTAGAATCAATTTTGAAGAGGACCCTTCCTCATGCCATGTCCTCAGTAGCAGGAAGGGCACTGAAAGACTCGGTTCATATTGCCTCTAAATTTTCTGACTTGGAGCATACCTTTTCTTCTCAAGGCTCTCTCAGATATGACATTATTGTTGATGTTGCACCTGAAGTCAGATGGGTTCCTGAGAATGGATACAAAAACTTGAAGGTGGTTGTTGAAATTGACAGTGAAATAGATGCTCAAAAAACTTCCGAACAAGAATTAAAGCGCCGCCACAAGTCCCTTGGTACATTAAGAATTGTGACAGATAGAGGATTACAGATTGGTGATGTTGCAGTAATTGATATATCAGCAACAACAATTGGTCAAGACCAATCTAGTGGTCAAAAGATTCCATCGGCAGAGAGCAAAGGTTATCGTTTTGATACGGAAGACGGTGATAAAATCCTTCCTGGGTTTCTTGATTCATTAATTGGCATTCAACGAGGTGAAACAAAGTCATTTCCCCTTGTGTTTCCAGAATCATGGAAACAAGAAGATCTCCGTGGTGTTCATGCTCAATTCACAGTTGAGTGCAAGGAACTATTCCACAGAGAATTGCCTCAGTTGGATGACTCACTAGCTGATAAGCTTCTCCCCGGCTCTACAACCCTAGAACAGGTCAAGGAAGCGTTGCTACAAAGATGCCTTGAAGTGGAGCAAACAGCTAGAGATCAAGCAACGGACAATGCAATTCTTGACCAGCTTTGCAAGATGGTGGAAGTTGATATTCCTCAATCCATATTTGAGGAGCAAGGTAGGCAGCTATATGGAGCCAAACTATTGCAGATACAGGCAAACATGAAATTAAATGAACAGCAGTTGGCTACTCTATCTAGTCCTAAGGCTGTGAAGGAGTACCTTGAAAATCAGAAGGACAACATTACGCATGTTATAAAACAGAATCTGGCAGTGGGAGATATATTTAAACGTGAAAATTTGCAGGTGGCCACAGAGGAACTCATGAAAGAGGTGGAAAATTCTATTGCTGAATTTAAACGTAGTAGTCAAGAATATGACGAAGACCGGGTGCAGGAACAGTTTCCTGATCGGTCGATTAGTCAAACAGTACAAGACATACTAGAGGGAGCAAAAGTGTTAGAATGGTTGAGAGAGCATGCAGTGATTGAGTACATAACCAGATGA 1647 42.99 MELFTFNFSSTIFNHSPWRPSLSSPSSISASFSKTPLLHCNNLRFLPPPFHLLHPLQIFPTSCRFASPASSPSSVDLGPKIDKLPADLEISETEEPNSRVRLSVGVPPAVCEDCHSRVIAEFMKQAKIPGFRPGKKVPESILVSYVGKDHVQKAIVESILKRTLPHAMSSVAGRALKDSVHIASKFSDLEHTFSSQGSLRYDIIVDVAPEVRWVPENGYKNLKVVVEIDSEIDAQKTSEQELKRRHKSLGTLRIVTDRGLQIGDVAVIDISATTIGQDQSSGQKIPSAESKGYRFDTEDGDKILPGFLDSLIGIQRGETKSFPLVFPESWKQEDLRGVHAQFTVECKELFHRELPQLDDSLADKLLPGSTTLEQVKEALLQRCLEVEQTARDQATDNAILDQLCKMVEVDIPQSIFEEQGRQLYGAKLLQIQANMKLNEQQLATLSSPKAVKEYLENQKDNITHVIKQNLAVGDIFKRENLQVATEELMKEVENSIAEFKRSSQEYDEDRVQEQFPDRSISQTVQDILEGAKVLEWLREHAVIEYITR 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7027206 7034265 - Lsi05G005670.1 Lsi05g00567 663059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00567 548 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 357 545 IPR027304 -
Lsi05g00567 548 SUPERFAMILY FKBP-like 255 358 - -
Lsi05g00567 548 Pfam Bacterial trigger factor protein (TF) 91 237 IPR008881 GO:0006457|GO:0015031
Lsi05g00567 548 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 75 547 - -
Lsi05g00567 548 Coils Coil 478 509 - -
Lsi05g00567 548 Hamap Trigger factor [tig]. 88 544 IPR005215 GO:0015031
Lsi05g00567 548 TIGRFAM tig: trigger factor 99 537 IPR005215 GO:0015031
Lsi05g00567 548 SUPERFAMILY Trigger factor ribosome-binding domain 89 227 IPR036611 GO:0006457|GO:0015031
Lsi05g00567 548 Gene3D - 251 355 IPR046357 GO:0003755
Lsi05g00567 548 Gene3D - 88 221 IPR036611 GO:0006457|GO:0015031
Lsi05g00567 548 Gene3D - 222 490 IPR037041 GO:0006457|GO:0015031
Lsi05g00567 548 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 75 547 IPR005215 GO:0015031
Lsi05g00567 548 Pfam Bacterial trigger factor protein (TF) C-terminus 371 537 IPR008880 GO:0006457|GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00567 K03545 tig; trigger factor - csv:101219032 930.628
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g573 . . . . . . Bma10g00578 . . Cmo06g00892 . . . . . . . . . . . . . . Cla10g00479 Cam10g0466 Cec10g0486 Cco10g0474 Clacu10g0486 Cmu10g1314 Cre10g0718 . . . Cone15ag1194 . Csa03g00480 . Cme06g02841 . . Bda05g00697 . . Bpe03g00772 . . Sed08g2980 . . . . . . . . Bhi11g00581 Tan01g1746 Cmetu06g1014 . Hepe06g0018 . . . . . . . . . Lsi05g00567 . Chy06g01842 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011555 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00567 Lsi_Chr05 FPKM 21.057344 23.020073 25.375261 26.750385 72.904335 76.861183 74.58596 14.937848 14.042868 14.58468