Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00568 ATGTTCGTTACGAAGCTTTTCTCACGCGCCTCCCGCAGTATTTTCCGCAGCTCGCTGCTCTCGTCGGCCTCCCAATCCGATAAAACCATTCACTTGCCAATTCTCACAAATCGCTTACACTATCTTGCTAACGAATCAACCAACAAGGAATCAGCGTTACATCATTCATTTTTCCTTCAAAAATTTGGATTATCAACATCTGCATCCCCTGAGACTTCTAATAAGGAAAATGGCAATACAGTACCAAGTAATGGCGGCTCTACAACCGAGGCAGAGCCGACGGCTGAAACTAATGATTCCGAGAGCGATGACGATCTTTCCATGGATGATCTGGTGAAAGTTGTAGCTGAGAAGGAAGAGCTTTTGAAGTTAAAGCACAAAGAGATTGAACAAATGCAAGATAAAGTTGTTCGCACTTATGCAGAGATGGAGAATGTGATGGCCAGGACAAGGCGTGAAGCCGAGAATTCAAAGAAGTTTGCTATACAGAACTTTGCAAAGAGTTTACTGGACGTTGCAGACAATCTAGGACGAGCTTCATCTGTAGTCAAGGAAAGTTTTTCAAAGATTGATTCAACTAAGGACTCTGCGGGGGCAGTACCCTTATTGAAAACCCTTCTTGAAGGTGTTGAAATGACTGAGAAACAGCTGTCTGAGGTGTTAAAGAAGTTTGGAGTGGAAATATTTGATCCTACGAATGAGCCATTTGATCCACATAGGCACAATGCAGTTTTTCAACTGCCAGATGGTTCTAAGCCTCCTGGTACCGTTGCAGCTGTATTGAAGAAAGGATACATGCTTTACGAGCGAGTACTTCGACCTGCCGAAGTTGGTGTTACGAAAGCTGTGGAGAATGAGGACGGTGCAACCGATGATGCAAATGAGAAGGGATCTCAAGGTTGA 903 43.96 MFVTKLFSRASRSIFRSSLLSSASQSDKTIHLPILTNRLHYLANESTNKESALHHSFFLQKFGLSTSASPETSNKENGNTVPSNGGSTTEAEPTAETNDSESDDDLSMDDLVKVVAEKEELLKLKHKEIEQMQDKVVRTYAEMENVMARTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDSTKDSAGAVPLLKTLLEGVEMTEKQLSEVLKKFGVEIFDPTNEPFDPHRHNAVFQLPDGSKPPGTVAAVLKKGYMLYERVLRPAEVGVTKAVENEDGATDDANEKGSQG 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7036514 7041950 - Lsi05G005680.1 Lsi05g00568 663060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00568 300 MobiDBLite consensus disorder prediction 67 107 - -
Lsi05g00568 300 CDD GrpE 130 279 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 PRINTS GrpE protein signature 137 153 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 PRINTS GrpE protein signature 260 279 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 PRINTS GrpE protein signature 233 248 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 Pfam GrpE 115 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 226 281 IPR009012 GO:0006457
Lsi05g00568 300 Gene3D - 109 224 IPR013805 -
Lsi05g00568 300 PANTHER GRPE PROTEIN 3 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 MobiDBLite consensus disorder prediction 67 95 - -
Lsi05g00568 300 ProSitePatterns grpE protein signature. 236 279 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 Hamap Protein GrpE [grpE]. 73 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi05g00568 300 Coils Coil 115 149 - -
Lsi05g00568 300 Gene3D Head domain of nucleotide exchange factor GrpE 225 281 IPR009012 GO:0006457
Lsi05g00568 300 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 116 225 IPR013805 -
Lsi05g00568 300 PANTHER GRPE PROTEIN HOMOLOG 3 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00568 K03687 GRPE; molecular chaperone GrpE - csv:101219271 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g01882 Lsi05g00568 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00568 Lsi-Chr5:7036514 Lsi08g00944 Lsi-Chr8:17909532 1.91E-11 dispersed
Lsi02g01882 Lsi-Chr2:24687815 Lsi05g00568 Lsi-Chr5:7036514 1.21E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g571 . . . . Bpe09g00153 . Bma10g00576 Bma13g01078 Cmo16g00946 Cmo06g00893 . Cma09g00968 . Car09g00883 Sed04g3701 Cpe06g00783 . Bhi09g01692 Tan01g3121 Cmetu01g0613 . Hepe01g1250 Mch11g1215 . Cla10g00480 Cam10g0467 Cec10g0487 Cco10g0475 Clacu10g0487 Cmu10g1315 Cre10g0720 Cone6ag0044 Cone9ag0052 Cone14ag1179 Cone15ag1191 Lsi02g01882 Csa03g00481 . Cme06g02842 Blo07g00884 Blo10g00848 Bda05g00699 Bda12g00933 . Bpe03g00773 . . Sed08g2981 . Cmo09g00969 . Cma16g00911 . Car16g00885 Cpe14g00736 . Bhi11g00582 Tan01g1745 Cmetu06g0127 . Hepe06g0017 . . Cla09g01032 Cam09g1087 Cec09g1086 Cco09g1107 . . Cre09g1052 Lsi05g00568 . Chy06g01841 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002397 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 2 4 2 2 1 1 2 2 2 2 3 2 3 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00568 Lsi_Chr05 FPKM 1.234336 1.107961 4.2142 3.609779 0.0 0.22324 0.0 0.140914 0.139556 0.188729