Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00571 ATGAGGAGAGGGAGAGGGGCGGCGGTGGCGGTGCCGGCGGCGCGTGAACCACCTACCACCGGATCGGAGAGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCATGGAAGAAAACGAGAGTGTGGTTAGGGACCTTCGATTCCGCCGAAGACGCGGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGTGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCGACGTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCTTTCCCCGATCCCCGATTTCAGATTAACCCTCACAGACCTACTTCCAGCAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGCCCTCGCCCTCCCTCAGCCGCCGCCGCTACTACCACTTCCCCCTCCCGCCGTTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGCCATAGCGATTGCGATTCCTCATCCTCCGTCATCGACGACGGCGACGACATCGCTTCCTCCTCCATCGTTCCTCGGAAACCGCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTAA 651 57.45 MRRGRGAAVAVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDPRFQINPHRPTSSSLSSTVESFSGPRPPSAAAATTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSIVPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL 216
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7088026 7088676 - Lsi05G005710.1 Lsi05g00571 663063
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00571 216 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Lsi05g00571 216 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lsi05g00571 216 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lsi05g00571 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 194 - -
Lsi05g00571 216 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Lsi05g00571 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 194 - -
Lsi05g00571 216 MobiDBLite consensus disorder prediction 94 112 - -
Lsi05g00571 216 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Lsi05g00571 216 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lsi05g00571 216 MobiDBLite consensus disorder prediction 94 184 - -
Lsi05g00571 216 MobiDBLite consensus disorder prediction 1 27 - -
Lsi05g00571 216 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Lsi05g00571 216 MobiDBLite consensus disorder prediction 114 150 - -
Lsi05g00571 216 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00571 Lsi-Chr5:7088026 Lsi11g01667 Lsi-Chr11:24921770 6.39E-43 dispersed
Lsi05g00571 Lsi-Chr5:7088026 Lsi10g01565 Lsi-Chr10:20065741 9.47E-50 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25318 PF00847 AP2 5.00E-14 CL0081 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00571 K09286 - csv:101219993 293.123