Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g00571 | ATGAGGAGAGGGAGAGGGGCGGCGGTGGCGGTGCCGGCGGCGCGTGAACCACCTACCACCGGATCGGAGAGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGAAGATTCGCGGCGGAGATCAGAGACCCATGGAAGAAAACGAGAGTGTGGTTAGGGACCTTCGATTCCGCCGAAGACGCGGCCCGTGCTTACGATAACGCCGCCATAACCCTCCGTGGCCCTAAAGCTAAAACCAATTTCCCTCTTCCTAATCCGACGTCGTTTTTCGATTACCCTCCTTTCCCTCCTCATCCCGTCAACGCTCCAGATCCTTTCCCCGATCCCCGATTTCAGATTAACCCTCACAGACCTACTTCCAGCAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGCCCTCGCCCTCCCTCAGCCGCCGCCGCTACTACCACTTCCCCCTCCCGCCGTTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGCCATAGCGATTGCGATTCCTCATCCTCCGTCATCGACGACGGCGACGACATCGCTTCCTCCTCCATCGTTCCTCGGAAACCGCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTCTTGATTTTACCGCCGATGATCTTCGATGTACCGCTTTGTGCCTCTAA | 651 | 57.45 | MRRGRGAAVAVPAAREPPTTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPNPTSFFDYPPFPPHPVNAPDPFPDPRFQINPHRPTSSSLSSTVESFSGPRPPSAAAATTTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSIVPRKPPLPFDLNIPPSDLLDFTADDLRCTALCL | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7088026 | 7088676 | - | Lsi05G005710.1 | Lsi05g00571 | 663063 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g00571 | 216 | PRINTS | Ethylene responsive element binding protein signature | 48 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | SUPERFAMILY | DNA-binding domain | 25 | 83 | IPR016177 | GO:0003677 | |
Lsi05g00571 | 216 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 194 | - | - | |
Lsi05g00571 | 216 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED | 1 | 194 | - | - | |
Lsi05g00571 | 216 | MobiDBLite | consensus disorder prediction | 94 | 112 | - | - | |
Lsi05g00571 | 216 | Gene3D | AP2/ERF domain | 24 | 83 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | MobiDBLite | consensus disorder prediction | 94 | 184 | - | - | |
Lsi05g00571 | 216 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lsi05g00571 | 216 | CDD | AP2 | 25 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi05g00571 | 216 | MobiDBLite | consensus disorder prediction | 114 | 150 | - | - | |
Lsi05g00571 | 216 | SMART | rav1_2 | 25 | 88 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00571 | Lsi-Chr5:7088026 | Lsi11g01667 | Lsi-Chr11:24921770 | 6.39E-43 | dispersed | |
Lsi05g00571 | Lsi-Chr5:7088026 | Lsi10g01565 | Lsi-Chr10:20065741 | 9.47E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25318 | PF00847 | AP2 | 5.00E-14 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g00571 | K09286 | - | csv:101219993 | 293.123 |