Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00576 ATGGCCTCAACTACCACTGAATCTTCTCGTATTCTTCATGAAATTGAGACCTTGAAATCTGCCAAGTCCGACTTAGAACGTCGTATTTCAGCTCTCGAAACCCAGCTCCACAACCTCAATCATCCCCTCAACAATGGCGTTTCTAATGCCTCTTCCACTTCACCATCCGCCTTTCCTGATGGTCTCTCCCCCGATATGATTTACAGATATAGTCGCCACCTCCTCCTTCCTTCCTTCGGAGTCCAAGGACAATTGAAGCTTTCCAAGTCTTCAATTTTAGTTGTTGGAGCGGGAGGGTTGGGTTCGCCAGCTTTATTGTATCTTGCAGCTTCTGGTGTTGGTCGTCTGGGAATTGTTGACCATGATGTAGTTGAGCTAAACAACATGCATCGGCAGATCATCCATACTGAGGCATATATTGGCCGGTCAAAAGTAGAATCTGCTGCTGCTACATGTCACTTGATCAACTCTACTGTCCAGATTGTTGAGCACAAAGAAGCACTTCGCACATCAAATGCTATAGAAATTTTTAGCAAGTATCCTCATTCAATGACCTTAGAGTTTGATATTGCTACTCTTACCCTATCTGCTTATAAGCGCCTGTATTTTACTCCTCTTGTGTCTGGCGCAGCACTAGGTTTGGAGGGGCAGCTCACAGTTTACAATTACAATGGAGGTCCATGCTACAGATGCCTATTTCCAACACCCCCACCAACAACCGCGTGCCAAAGGTGTGCTGACAGTGGTGTTCTAGGAGTAGTTCCTGGGATCATTGGTTGTCTTCAAGCCTTGGAGGCCATAAAAATTTCAAGTGCGGTCGGCGAGCCACTTTCAGGACGGATGCTTCTGTTTGATGCCTTGGCAGCAAGGATCCGAATTGTCAAGATTCGTGGAAGGTCGTTGCAATGTGAAGTATGTGGAGAAAATTCTAAGTTCAAAGCAGCACAATTTCAAGAATTTGACTATGAAAAGTTCACTCAGTCTCCATTATCTACGTCTCCTCTGAGGTTAAAACTACTAGAGCCAAACTCAAGAATAAGTGCCAAAGAGTACAGAGATCGACTTCGTAATGGCGAATCACACGTGCTTTTGGATGTCCGTCCCGAGCACCATTTCAAGATTGTTTCTCTTCCCAACTCCCTAAACATTCCGCTGGCGAGTTTGGACGGAAGGCTGGAAGAAGTCGTTTCGGCTTTGAAGGAAGAACATAAACAGAGTTCAGAGTCCTCTAGTGCTGATGTTCAATTATATGTTGTTTGTAGGAGAGGGAATGATTCTCAAAGAGCTGTTAAGTATCTCCAGGAGAAAGGATTTCCTTCAGCTAAGGATATCATTGGTGGATTGGAGGGTTGGGCCCATGAGGTAGACCCCAATTTCCCCTCCTATTAA 1389 45.14 MASTTTESSRILHEIETLKSAKSDLERRISALETQLHNLNHPLNNGVSNASSTSPSAFPDGLSPDMIYRYSRHLLLPSFGVQGQLKLSKSSILVVGAGGLGSPALLYLAASGVGRLGIVDHDVVELNNMHRQIIHTEAYIGRSKVESAAATCHLINSTVQIVEHKEALRTSNAIEIFSKYPHSMTLEFDIATLTLSAYKRLYFTPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKISSAVGEPLSGRMLLFDALAARIRIVKIRGRSLQCEVCGENSKFKAAQFQEFDYEKFTQSPLSTSPLRLKLLEPNSRISAKEYRDRLRNGESHVLLDVRPEHHFKIVSLPNSLNIPLASLDGRLEEVVSALKEEHKQSSESSSADVQLYVVCRRGNDSQRAVKYLQEKGFPSAKDIIGGLEGWAHEVDPNFPSY 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7150902 7157940 + Lsi05G005760.1 Lsi05g00576 663068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00576 462 CDD RHOD_ThiF 337 462 - -
Lsi05g00576 462 SMART rhod_4 347 457 IPR001763 -
Lsi05g00576 462 CDD ThiF_MoeB_HesA_family 69 296 - -
Lsi05g00576 462 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 462 IPR028885 GO:0002143|GO:0004792|GO:0005829
Lsi05g00576 462 Coils Coil 15 35 - -
Lsi05g00576 462 Gene3D - 344 462 IPR036873 -
Lsi05g00576 462 Pfam Rhodanese-like domain 347 453 IPR001763 -
Lsi05g00576 462 ProSiteProfiles Rhodanese domain profile. 357 460 IPR001763 -
Lsi05g00576 462 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 447 IPR045886 -
Lsi05g00576 462 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 62 429 IPR035985 GO:0008641
Lsi05g00576 462 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 5 447 - -
Lsi05g00576 462 Gene3D - 64 312 - -
Lsi05g00576 462 Pfam ThiF family 70 304 IPR000594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00576 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - csv:101220467 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00504 Lsi-Chr2:4288632 Lsi05g00576 Lsi-Chr5:7150902 4.91E-10 dispersed
Lsi05g00576 Lsi-Chr5:7150902 Lsi05g01447 Lsi-Chr5:22346974 1.23E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00194 . 1218 1505 Sulfurtransferasese/Rhodanese AT1G79230 59.5 7.0e-105 377.5
Lsi05g00194 . 1218 1468 Sulfurtransferasese/Rhodanese AT1G16460 60.5 1.9e-84 309.3
Lsi02g00153 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 62.6 2.3e-89 325.9
Lsi02g01151 . 7 649 Sulfurtransferasese/Rhodanese AT1G09280 60.2 7.6e-219 756.9
Lsi04g01009 . 108 495 Sulfurtransferasese/Rhodanese AT2G40760 69.2 1.6e-150 529.6
Lsi03g01503 . 409 714 Sulfurtransferasese/Rhodanese AT1G17850 50.4 2.5e-92 336.3
Lsi03g02213 . 36 216 Sulfurtransferasese/Rhodanese AT3G08920 64.6 5.5e-66 247.7
Lsi06g01599 . 1 290 Sulfurtransferasese/Rhodanese AT4G24750 67.2 6.5e-110 394.0
Lsi10g01098 . 67 260 Sulfurtransferasese/Rhodanese AT5G19370 60.0 3.0e-62 235.7
Lsi05g00576 . 113 462 Sulfurtransferasese/Rhodanese AT5G55130 66.5 2.2e-131 465.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00576 Lsi_Chr05 FPKM 14.962641 15.773354 15.453237 15.941025 12.849991 12.373451 14.049446 14.708293 14.446692 16.822659