Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00579 ATGGTGAGAGAAGCAGGAGGCAGCTTGGTGCTTGTTGCAGCATATTCAACTTCCTTCTTGCTCTTTGCTTTGCTTTTTTCTGCCCTTTTTGCCTCATTTGATCTTCTACCATTTCATTCATTGAGATGGGAGTTGATGGGGAATTGGAGAGATGGTTTGAGTAGCAACACAAGAGTCGTTCAGAGCATAGAAGAGATAGAGCCTCTTGAATTTCTCTTGAGAAGACTAGTGAGAGGTGAGGATCGTAAGCAACTACAAAAAACAGGATTTTCTTGTCACACAGATTTGCATTCCAAAGTGTGTTTGACAAACAACCCAACAAGAATCAACAACACCAACCTTAAATTTTACATCTCAACCAATAATGACACTCAACAAACAAATATTTCTCCAATCTCAATTCATCCATATGCAAGACAAGAAGACAAAATTACCTTAAGAGATGTTACTCCACTTCAAATAATATTCCAACCAAACAAAACCCTTTTACCTCTTTGTCAATTCATCCATAATGTTCCTGTCCTCATCTTCTCCACCGGCGGCTTCACCGGAAACCTATTCCATGACTTCGACGAGACCATCATTCCTTTGTTCATCACTTCTTACCACTTACGAACTCGGGTTCGGTTTCTTGTTACCGATCACAAACCTTGGTGGGTCCGAAAATACAACCGAATTCTCTCCAGTTTATCTCGTTACAATGTCATAAATCCAGCTGAAGATGGAGCTGTTCACTGCTTCAATGGAGGCATCATAGGACTCAAGTTCCACAACATTTTATCGTTGAACAACACCGATATTCCAGGAGGTTATTCGATGTCAGACTTTCGGAGTTTCCTAAGACAAACATACAATTTAAAAGTGAGGAATGTGAGGGAAATCATCGTGAGTGGGAAAAAGCCAATGGTAATGTTGATATCACGTCAAAAATCAAGGAGGTTTTCGAATGAAGGGGAAATGGTTGAGATGATGAAGGAAGTTGGGTTCGAAGTGATGACGACAACGCCACAAAGAATGTCGAATTTGGACAAGTTTTCGTCGGTTGTTAACATGTGTAGTGTGATCGTTGGGGCGCATGGGGCCGGTCTGACAAATGAGGTGTTTTTGGCGGCCGGAGCGGTGGTCGTGCAGGTGGTGCCGTTGGGGCTTGATTGGCCTTCTACCTTTTTGTTTGGGCAGCCAGCGGCTGAGATGGAGCTTGAGTATTTGGAGTATAAGATTGAGGCAAAGGAGAGTTCTTTATGGGATAAATATGGGGAAAATCATACGGTTATTAAAGACCCTCAATCAATATTTGACAAGGGTTACTTTGCTAGTAGAGCTATCTATATAGATGGGCAGAATTTGAAGATAAATTTGACTAGGTTTCGAGATACTATGATTCAAGTTAAGAAATTGATTGGACAAAAGAAGAAGTTGGTGAATTGA 1428 41.25 MVREAGGSLVLVAAYSTSFLLFALLFSALFASFDLLPFHSLRWELMGNWRDGLSSNTRVVQSIEEIEPLEFLLRRLVRGEDRKQLQKTGFSCHTDLHSKVCLTNNPTRINNTNLKFYISTNNDTQQTNISPISIHPYARQEDKITLRDVTPLQIIFQPNKTLLPLCQFIHNVPVLIFSTGGFTGNLFHDFDETIIPLFITSYHLRTRVRFLVTDHKPWWVRKYNRILSSLSRYNVINPAEDGAVHCFNGGIIGLKFHNILSLNNTDIPGGYSMSDFRSFLRQTYNLKVRNVREIIVSGKKPMVMLISRQKSRRFSNEGEMVEMMKEVGFEVMTTTPQRMSNLDKFSSVVNMCSVIVGAHGAGLTNEVFLAAGAVVVQVVPLGLDWPSTFLFGQPAAEMELEYLEYKIEAKESSLWDKYGENHTVIKDPQSIFDKGYFASRAIYIDGQNLKINLTRFRDTMIQVKKLIGQKKKLVN 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7178457 7181313 + Lsi05G005790.1 Lsi05g00579 663071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00579 475 PANTHER GLYCOSYLTRANSFERASE 63 470 IPR007657 GO:0016757
Lsi05g00579 475 Pfam Glycosyltransferase 61 275 376 IPR007657 GO:0016757
Lsi05g00579 475 PANTHER EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE-LIKE 63 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00579 - - - csv:101206708 796.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00218 Lsi-Chr2:1794440 Lsi05g00579 Lsi-Chr5:7178457 5.01E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g552 . . . . . . . . . Cmo06g00897 . . . . . . . . . . . . . . Cla10g00490 Cam10g0480 Cec10g0499 Cco10g0485 Clacu10g0499 Cmu10g1326 Cre10g0731 . . . . . Csa03g00494 . Cme06g02858 . . . . . . . . Sed14g0140 . . . . . . . . Bhi11g00593 Tan01g1728 Cmetu06g2813 . . . . . . . . . . . Lsi05g00579 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013386 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 2 2 1 0 1 1 0 2 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00579 Lsi_Chr05 FPKM 11.946276 15.837263 9.981031 8.169869 7.692364 8.509328 8.694314 8.84264 9.565407 8.241213