Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g00580 ATGGAATCCTCCGTCGTAGCAGCTGAGCGCATTCTTTCCTATAATTTCAAGAACAAGAAGCTTCTAGAAGAAGCCTTCACCCACTCCTCCTACCTCGACTCTGCCTCCTATGAGCGCCTCGAGTTTATCGGCGATTCAGCTATTGGCCTCGCTATTACCAATTACTTCTTTCTTGCTTATCCGGACCTCCATCAGGGCCAACTATCTTTACTTAGGGCTGCTAACATTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCGCCATGGATTGTATAACTATGTTAGACGCAACGCCGCCGCTCTCGATGATAAGGTTAGAGAGTTTGTCGATTCCGTCGCCTTAGAAGACAACTCAGTAGTTCCGTATGGTGGGTTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTAGCTGGTGCTGTATATGTAGATGTTAATTTTGATCTTCAAAAACTATGGGTGATTATTAGGGGTTTGTTAGAGCCTATCTATACTCTTGAAGACTTACAGGTAGAGCCCCAACCTGTAACTGTGCTCTTTGAAATTTGCCAAAAAAATGGGAAGCAGGTAGATATCAAGAATTGGAAAAACAGTACGAAGAACATCGCAAGTGTCTATGTCGATGGTAATTTTGTTGCTTCCGGTTCTTCAATGCAAAAGGAAATTGCAAGGCTTAATGCTGCCAGAGAAGCTCTCATCAAATTGTCGGATTCTATGGATACCAAAATTAGAACAGTTGTAACTATTGATGGTATCGATGAATCGTTTGAGATTGAAGGGGCAAAACATAAGCTACATGATTTTTGTTGCAAGAAAAAGTGGCCGAAACCAAACTACAGTACTGAGAAAGATTTAGGACCTTCACATGAAAGGAAATTTGTTTGCTCTGTTAAAATTTCCACTTCTTCTGGTACGCTCTATATGATGGGAGATGAGAAGTCAAGAGTAAAGGATGCAGAGAACTCTGCAGCCTCTTTGATGATTCGTGCTTTACAGGAAAGAAACTATCTCTAA 1020 42.16 MESSVVAAERILSYNFKNKKLLEEAFTHSSYLDSASYERLEFIGDSAIGLAITNYFFLAYPDLHQGQLSLLRAANISTEKLARVAVRHGLYNYVRRNAAALDDKVREFVDSVALEDNSVVPYGGLVKAPKVLADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEDLQVEPQPVTVLFEICQKNGKQVDIKNWKNSTKNIASVYVDGNFVASGSSMQKEIARLNAAREALIKLSDSMDTKIRTVVTIDGIDESFEIEGAKHKLHDFCCKKKWPKPNYSTEKDLGPSHERKFVCSVKISTSSGTLYMMGDEKSRVKDAENSAASLMIRALQERNYL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7180075 7183918 - Lsi05G005800.1 Lsi05g00580 663072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g00580 339 SMART DRBM_3 263 334 IPR014720 -
Lsi05g00580 339 SMART DRBM_3 177 238 IPR014720 -
Lsi05g00580 339 Gene3D Ribonuclease III domain 1 171 IPR036389 GO:0004525|GO:0006396
Lsi05g00580 339 Gene3D - 172 243 - -
Lsi05g00580 339 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 7 330 - -
Lsi05g00580 339 CDD RIBOc 20 171 IPR000999 GO:0004525|GO:0006396
Lsi05g00580 339 Pfam Ribonuclease III domain 38 146 IPR000999 GO:0004525|GO:0006396
Lsi05g00580 339 SUPERFAMILY RNase III domain-like 4 167 IPR036389 GO:0004525|GO:0006396
Lsi05g00580 339 SUPERFAMILY dsRNA-binding domain-like 262 337 - -
Lsi05g00580 339 Gene3D - 260 336 - -
Lsi05g00580 339 PANTHER DICER-RELATED 7 330 - -
Lsi05g00580 339 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 262 335 IPR014720 -
Lsi05g00580 339 SMART riboneu5 20 171 IPR000999 GO:0004525|GO:0006396
Lsi05g00580 339 Pfam Double-stranded RNA binding motif 263 333 IPR014720 -
Lsi05g00580 339 Pfam Double-stranded RNA binding motif 177 237 IPR014720 -
Lsi05g00580 339 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 176 239 IPR014720 -
Lsi05g00580 339 SUPERFAMILY dsRNA-binding domain-like 130 237 - -
Lsi05g00580 339 ProSiteProfiles Ribonuclease III family domain profile. 5 148 IPR000999 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g00580 - - - csv:101206949 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00580 Lsi-Chr5:7180075 Lsi05g02235 Lsi-Chr5:28930371 1.91E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g00580 Lsi_Chr05 FPKM 44.314583 47.433426 33.223331 32.831642 38.14193 37.506405 39.103443 45.492546 43.2342 44.925297